CN188157

Overview
NameCN188157
Unique NameCN188157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11535 contig Csv1_Contig11535:197..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188157 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = -3 
Query:  347 WFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 517
            WFY YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:  165 WFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221
[Close]
BLAST of CN188157 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = -3 
Query:  347 WFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 517
            WFY YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:  165 WFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221
[Close]
BLAST of CN188157 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = -3 
Query:  356 WFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNL 517
            WFYTYET G F +E ECPK +AWVKRC++RETV+  LPD KKV+  +  ++  L
Sbjct:  163 WFYTYETYGNFKMEEECPKLMAWVKRCMERETVSNTLPDAKKVYGLIVELQKTL 216
[Close]
BLAST of CN188157 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = -3 
Query:  350 WFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 517
            WFY+YETC  F++EAECPK + W K C++ E+V+K+LP   K++ FV  ++  LGL
Sbjct:  164 WFYSYETCANFSIEAECPKLVVWAKTCMESESVSKSLPHPHKIYGFVLELKHKLGL 219
[Close]
BLAST of CN188157 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = -3 
Query:  350 WFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 517
            WFY+YETC  F++EAEC K + W + C++ E V+K+LP   K+++FV  ++  LGL
Sbjct:  164 WFYSYETCANFSIEAECRKLVVW-QNCMENERVSKSLPHPHKIYDFVLELKHKLGL 218
The following BLAST results are available for this feature:
BLAST of CN188157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GSTXC_TOBAC8.618e-1866.67Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX4_TOBAC8.618e-1866.67Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_SOYBN5.780e-1457.41Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXA_TOBAC2.869e-1350.00Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX1_NICPL7.813e-1146.43Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188157 ID=CN188157; Name=CN188157; organism=Citrus sinensis; type=EST; length=522bp
CTTTTTTTTTACACCAAATACTATACAATATTATTATAATACAACATAAT
ATAATACACATATATTAAAATAATACAATAAAAATATACAATTCAATATA
CTAAACACACTCTTCGTGATTACCATACACTAAGATAACAACAGTAGGGG
ACAAAATTAATTGTCCTTTATTGGATTATTGGAGCTTATTTTTACTAGGG
AAATACAACAATCCGAATACAAAAACACAATAGGAAAACAACCATCACAA
GCCAAACCAACATCAACCACCTAAAGAATAAGCAGGCAGCACGATTGCGC
TGCTTGACTTATTCTCAGCTCCAAGGTATGTCCCTTTTTCTCTCTACTCC
AATCCTAAATTTGTCCTCATCGCTGAAACAAATTCAAACACTTTCTTCCC
ATCAGGAAGTGCCTTGGCAACAGTCTCCCTCTGCAAGCATCTCTTCACCC
AAGCTATGAACTTGGGGCACTCAGCCTCGACGTTGAACTTTCCACATGTC
TCATACGTGTAAAACCAACCCT
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