CN188150

Overview
NameCN188150
Unique NameCN188150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188150_ssr107 microsatellite CN188150_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13552 contig Csv1_Contig13552:28..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YIPL_ORYSJ (Putative yippee-like protein Os10g0369500 OS=Oryza sativa subsp. japonica GN=Os10g0369500 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.313e-31
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = -1
Query:  215 VDSASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK 475
            VD+AS D I+S+ F+GRFGRAYLF  VVN+SLGP E+R L++GLH+V DIYCS CQQ+LGWRYEKAYEES+KYKEG +ILEK RM K
Sbjct:   30 VDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKARMWK 116          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL4_RAT (Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.170e-26
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A  D ++SK+FQG  GRAYLF SVVNV  GP E+RLL++GLHSV DI+C SC+  LGW+YE+A+E SQKYKEG YI+E   M+K  GW
Sbjct:   39 AKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGW 126          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL4_MOUSE (Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.170e-26
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A  D ++SK+FQG  GRAYLF SVVNV  GP E+RLL++GLHSV DI+C SC+  LGW+YE+A+E SQKYKEG YI+E   M+K  GW
Sbjct:   39 AKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGW 126          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL4_HUMAN (Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.170e-26
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A  D ++SK+FQG  GRAYLF SVVNV  GP E+RLL++GLHSV DI+C SC+  LGW+YE+A+E SQKYKEG YI+E   M+K  GW
Sbjct:   39 AKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGW 126          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL4_CERAE (Protein yippee-like 4 OS=Cercopithecus aethiops GN=YPEL4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.170e-26
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A  D ++SK+FQG  GRAYLF SVVNV  GP E+RLL++GLHSV DI+C SC+  LGW+YE+A+E SQKYKEG YI+E   M+K  GW
Sbjct:   39 AKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGW 126          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL3_ORYLA (Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.313e-26
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A+ D ++SK+FQG  GRAYLF SVVNV  GP EERLL++GLH+V DIYC +C   LGW+YE+A+E SQKYKEG YI+E   M+K  GW
Sbjct:   31 ANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKYIIELSHMIKDNGW 118          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL2_PONAB (Protein yippee-like 2 OS=Pongo abelii GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.245e-26
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A+ D ++SK+FQG  GRAYLF SVVNV  GP EER+L++GLH+V DIYC +C+  LGW+YE A+E SQKYKEG YI+E   M+K  GW
Sbjct:   31 ANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKDNGW 118          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL2_MOUSE (Protein yippee-like 2 OS=Mus musculus GN=Ypel2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.245e-26
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A+ D ++SK+FQG  GRAYLF SVVNV  GP EER+L++GLH+V DIYC +C+  LGW+YE A+E SQKYKEG YI+E   M+K  GW
Sbjct:   31 ANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKDNGW 118          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL2_HUMAN (Protein yippee-like 2 OS=Homo sapiens GN=YPEL2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.245e-26
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A+ D ++SK+FQG  GRAYLF SVVNV  GP EER+L++GLH+V DIYC +C+  LGW+YE A+E SQKYKEG YI+E   M+K  GW
Sbjct:   31 ANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKDNGW 118          
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL2_CERAE (Protein yippee-like 2 OS=Cercopithecus aethiops GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.245e-26
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  206 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK-AGW 466
            A+ D ++SK+FQG  GRAYLF SVVNV  GP EER+L++GLH+V DIYC +C+  LGW+YE A+E SQKYKEG YI+E   M+K  GW
Sbjct:   31 ANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKDNGW 118          
The following BLAST results are available for this feature:
BLAST of CN188150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
YIPL_ORYSJ1.313e-3172.41Putative yippee-like protein Os10g0369500 OS=Oryza... [more]
YPEL4_RAT2.170e-2662.50Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel... [more]
YPEL4_MOUSE2.170e-2662.50Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=... [more]
YPEL4_HUMAN2.170e-2662.50Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=... [more]
YPEL4_CERAE2.170e-2662.50Protein yippee-like 4 OS=Cercopithecus aethiops GN... [more]
YPEL3_ORYLA6.313e-2662.50Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 ... [more]
YPEL2_PONAB8.245e-2661.36Protein yippee-like 2 OS=Pongo abelii GN=YPEL2 PE=... [more]
YPEL2_MOUSE8.245e-2661.36Protein yippee-like 2 OS=Mus musculus GN=Ypel2 PE=... [more]
YPEL2_HUMAN8.245e-2661.36Protein yippee-like 2 OS=Homo sapiens GN=YPEL2 PE=... [more]
YPEL2_CERAE8.245e-2661.36Protein yippee-like 2 OS=Cercopithecus aethiops GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188150 ID=CN188150; Name=CN188150; organism=Citrus sinensis; type=EST; length=655bp
TTTTTTTTTTTTTTTTTAATCTAAAGTTATTTTCATTAAATCAAACCTTT
TGCAGCTGCGAACATGCCAGCCTACAATGTCTACTAACACGATGAGATCA
GATCAATTCTTTCTTTCTTTCCTTAAAAGAGAGAAAAAATGTTCAGCTAC
AAAAAGATTGGCTTCTTCCAATATGTTTTATATGTATCCATATAACATGA
CATCACCAACCTGCCTTCAGCATTCGTTCCTTTTCCAGAATGTACATCCC
TTCTTTATACTTCTGGCTCTCTTCATATGCCTTCTCATATCTCCAGCCGA
GTAACTGCTGACAGGAGCTGCAATAAATGTCATTCACGGAATGCAACCCA
CTGACAAGAAGCCGCTCTTCTCTAGGCCCAAGAGACACATTTACCACAGA
TCGGAAAAGATAAGCACGGCCAAAACGGCCTTGAAAAGCCTTGGAAACGA
TGTGATCGGGAGATGCCGAGTCGACTTTGCAACTCTTGCACTTGAAGATC
CTTTTTTTTTTTTTTTTTTTTTTGAACCAACCGAAGTGTATCACTCCAAT
TGCATATGAAAAAGAAGTCCCTTTCATTTGATTCGAACAAAATTACAACA
CCATGTAAACTTTATTTTGCTATTACATGAGGAAATTATCAAGAGGCTGA
GTAAC
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