EY666006

Overview
NameEY666006
Unique NameEY666006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5553 contig Csv1_Contig5553:452..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY666006 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.828e-28
Identity = 53/80 (66.25%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:   13 AKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 252
            +KRGD+H+TEKIF +MR+ GY +R +QFQ L+QAYINAK+PAYG+RDR++ADN+FPNK++AAQ+AQ D F+KTA+S++LD
Sbjct:  517 SKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596
[Close]
BLAST of EY666006 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.840e-26
Identity = 51/79 (64.56%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:   16 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 252
            +RGD+H+TEKIF RM+Q GY +RF  +QTL+QAY+NAK PAYG+++RM+ADN+FPNK LAAQ+A+ D F+KT +S+LLD
Sbjct:  516 RRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKKTPLSDLLD 594
[Close]
BLAST of EY666006 vs. ExPASy Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.250e-23
Identity = 49/80 (61.25%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:   13 AKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 252
            AKRGD+H+TEK+F +M++  Y A+  Q++T++ AYINAKTPAYG+ +RM+ADNVFPNK+LAA++AQV+ F+K  VS LLD
Sbjct:  530 AKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMIERMKADNVFPNKSLAAKLAQVNPFKKCPVSVLLD 609
The following BLAST results are available for this feature:
BLAST of EY666006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PP135_ARATH8.828e-2866.25Pentatricopeptide repeat-containing protein At1g80... [more]
PPR44_ARATH2.840e-2664.56Pentatricopeptide repeat-containing protein At1g15... [more]
PP234_ARATH2.250e-2361.25Pentatricopeptide repeat-containing protein At3g15... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666006 ID=EY666006; Name=EY666006; organism=Citrus sinensis; type=EST; length=578bp
CCACGCGTCCGTGCAAAACGGGGTGATATCCATAGCACAGAAAAGATTTT
CCATAGGATGAGGCAGGTTGGTTATGTGGCTCGATTCAAGCAATTCCAAA
CATTAGTCCAAGCATATATAAATGCGAAGACTCCAGCATATGGAATTAGG
GATAGAATGAGAGCAGATAATGTATTCCCAAACAAGGCTTTAGCAGCACA
AGTGGCTCAGGTTGATGCATTTAGGAAGACAGCGGTGTCAGAGTTGCTTG
ACTAAGGCTTTCACTCATTCTGGACGTCCAAGTCTTTATCTATGCACAGC
CTATATCTGTCTTATAGAGAGACATTTTTAATTGCTTGTATTGACACTTC
TAGGATTTCAAGAATTAAGCTGCTAGTTGTTCTTAGTTTATTTGTCTTTC
TTAAAAGTTGGCTTCCCCTCTTGGTCGCAAATATAAATGCAGCTATCAAG
GATTTCAAGAGTTGAGCTGATAGTCATGCCTAGTTTATTTGTATTTTTCA
AAAGTTGGCTTCCCCTCTTGTTGGTCGCAAATCTAAACGCAGCTTTCAAG
GATTTTAAGAGTTAAAAAAAAAAAAAAA
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