CN188146

Overview
NameCN188146
Unique NameCN188146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig295 contig Csv1_Contig295:433..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP97_STRFN (97 kDa heat shock protein OS=Strongylocentrotus franciscanus GN=HSP110 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.044e-61
Identity = 119/221 (53.85%), Postives = 155/221 (70.14%), Query Frame = 1
Query:    1 SRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDL--PENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEA-PLNIECLM 654
            +RQFSDP +Q+D   +P+ VT+ P+G   +  +YLGET  FTP Q+  M+L+ LKA AE NL   VVDC I +P Y+TDL+RR VI AA IAGL+ LR+  +TTA ALAYGIYK DL  PE    NV FVD GH+SLQV +  F KG+LK+L ++ D+++GGRDFD +L +HFA  F+  YK+DV  N RA LRL   C+K KK++SAN     +NIEC+M
Sbjct:   72 ARQFSDPSVQKDAHVVPYKVTQLPNGNVGMQVQYLGETETFTPEQIYAMILTKLKATAEVNLCRKVVDCVISVPQYYTDLERRGVIHAAEIAGLNCLRVISDTTAVALAYGIYKQDLPTPEEKPRNVVFVDCGHSSLQVSVCAFNKGKLKVLANASDKNLGGRDFDWLLAEHFAVDFQTRYKMDVKSNQRAWLRLMAECDKTKKLMSANATVISMNIECIM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP97_STRPU (97 kDa heat shock protein OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.347e-60
Identity = 117/221 (52.94%), Postives = 156/221 (70.59%), Query Frame = 1
Query:    1 SRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDL--PENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE-APLNIECLM 654
            +R+FSDP +Q+D K +P+ +T+ P+G   +  +YLGET  FTP Q+  M+L+ LK+ AE NL   VVDC I +P Y+TDL+RR VI AA IAGL+ LR+  +TTA ALAYGIYK DL  PE    NV FVD GH+SLQV +  F KG+LK+L ++ D+++GGRDFD +L +HFA  F+  YK+DV  N RA LRL   C+K KK++SAN     +NIEC+M
Sbjct:   72 ARRFSDPSVQKDAKVVPYKITQLPNGNVGMQVQYLGETETFTPEQIYAMILTKLKSTAEINLCRKVVDCVISVPQYYTDLERRGVIHAAEIAGLNCLRVISDTTAVALAYGIYKQDLPTPEEKPRNVVFVDCGHSSLQVSVCAFNKGKLKVLANASDKNLGGRDFDWLLAEHFAVDFQTRYKMDVKSNQRAWLRLMAECDKTKKLMSANATLISMNIECIM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP74_CANFA (Heat shock 70 kDa protein 4 OS=Canis familiaris GN=HSPA4 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.986e-56
Identity = 112/220 (50.91%), Postives = 148/220 (67.27%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP--ENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-PEAPLNIECLM 654
            R FSDP ++ +  +L + + + P G   I  +Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL +ETTA ALAYGIYK DLP  E    NV FVD+GH+S QV +  F +G+LK+L  +FD ++GGR FDEVL  HF  +F ++YK+D+    RA LRL   CEKLKK++SAN  + PL+IEC M
Sbjct:   73 RAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVKYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSSYQVSVCAFNRGKLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLSIECFM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS74L_MOUSE (Heat shock 70 kDa protein 4L OS=Mus musculus GN=Hspa4l PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.703e-55
Identity = 113/220 (51.36%), Postives = 150/220 (68.18%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQ--LNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-PEAPLNIECLM 654
            R F DP +Q +   LP+ + + P+G   +  RYL E R F   QV GMLL+ LK  +E+ L   V DC I IP +FTD +RR+V+ AA +AGL+ LRL +ETTA ALAYGIYK DLP  D+   NV F+D+GH++ QV +  F KG+LK+L  +FD  +GGR+FDE L  +F  +FK +YKI+V +N+RA LRL   CEKLKK++SAN  + PLNIEC M
Sbjct:   73 RSFDDPIVQTERIRLPYELQKMPNGSTGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPSLDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS74L_HUMAN (Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.225e-55
Identity = 113/220 (51.36%), Postives = 150/220 (68.18%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQ--LNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-PEAPLNIECLM 654
            R F DP +Q +   LP+ + + P+G   +  RYL E R F   QV GMLL+ LK  +E+ L   V DC I IP +FTD +RR+V+ AA +AGL+ LRL +ETTA ALAYGIYK DLP  D+   NV F+D+GH++ QV +  F KG+LK+L  +FD  +GGR+FDE L  +F  +FK +YKI+V +N+RA LRL   CEKLKK++SAN  + PLNIEC M
Sbjct:   73 RSFDDPIVQTERIRLPYELQKMPNGSAGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP74_MOUSE (Heat shock 70 kDa protein 4 OS=Mus musculus GN=Hspa4 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.906e-55
Identity = 112/220 (50.91%), Postives = 147/220 (66.82%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP--ENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-PEAPLNIECLM 654
            R FSDP ++ +  +L + + + P G   I   Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL +ETTA ALAYGIYK DLP  E    NV FVD+GH++ QV +  F KG+LK+L  +FD ++GGR FDEVL  HF  +F ++YK+D+    RA LRL   CEKLKK++SAN  + PL+IEC M
Sbjct:   73 RAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPSFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLSIECFM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP74_PONAB (Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSPA4 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.795e-55
Identity = 112/220 (50.91%), Postives = 147/220 (66.82%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP--ENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-PEAPLNIECLM 654
            R FSDP ++ +  +L + V + P G   I   Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL +ETTA ALAYGIYK DLP  E    NV FVD+GH++ QV +  F +G+LK+L  +FD ++GGR FDEVL  HF  +F ++YK+D+    RA LRL   CEKLKK++SAN  + PL+IEC M
Sbjct:   73 RAFSDPFVEAEKSNLAYDVVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNRGKLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLSIECFM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP74_RAT (Heat shock 70 kDa protein 4 OS=Rattus norvegicus GN=Hspa4 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.956e-55
Identity = 111/220 (50.45%), Postives = 147/220 (66.82%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP--ENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-PEAPLNIECLM 654
            R FSDP ++ +  +L + + + P G   I   Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL +ETTA ALAYGIYK DLP  E    NV FVD+GH++ QV +  F +G+LK+L  +FD ++GGR FDEVL  HF  +F ++YK+D+    RA LRL   CEKLKK++SAN  + PL+IEC M
Sbjct:   73 RAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPSFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNRGKLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKVRALLRLSQECEKLKKLMSANASDLPLSIECFM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP74_HUMAN (Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4)

HSP 1 Score: 214.157 bits (544), Expect = 4.956e-55
Identity = 111/220 (50.45%), Postives = 147/220 (66.82%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP--ENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-PEAPLNIECLM 654
            R FSDP ++ +  +L + + + P G   I   Y+ E R FT  QV  MLLS LK  AES L   VVDC + +P ++TD +RR+V+DA  IAGL+ LRL +ETTA ALAYGIYK DLP  E    NV FVD+GH++ QV +  F +G+LK+L  +FD ++GGR FDEVL  HF  +F ++YK+D+    RA LRL   CEKLKK++SAN  + PL+IEC M
Sbjct:   73 RAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNRGKLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLSIECFM 292          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS105_RAT (Heat shock protein 105 kDa OS=Rattus norvegicus GN=Hsph1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.350e-52
Identity = 106/220 (48.18%), Postives = 146/220 (66.36%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLN--VAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-PEAPLNIECLM 654
            R F+DP +Q++ ++L + +    +G   I   Y+ E  +F+  Q+  MLL+ LK  AE+NL   V DC I +P +FTD +RR+V+DAA I GL+ LRL ++ TA AL YGIYK DLP  D+    V FVD+GH+S QV    F KG+LK+LG +FD  +GG++FDE L +HF A+FK +YK+D     RA LRL   CEKLKK++S+N  + PLNIEC M
Sbjct:   73 RAFNDPFIQKEKENLSYDLVPMKNGGVGIKVMYMDEDHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIYKQDLPNADEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFM 292          
The following BLAST results are available for this feature:
BLAST of CN188146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP97_STRFN6.044e-6153.8597 kDa heat shock protein OS=Strongylocentrotus fr... [more]
HSP97_STRPU1.347e-6052.9497 kDa heat shock protein OS=Strongylocentrotus pu... [more]
HSP74_CANFA9.986e-5650.91Heat shock 70 kDa protein 4 OS=Canis familiaris GN... [more]
HS74L_MOUSE1.703e-5551.36Heat shock 70 kDa protein 4L OS=Mus musculus GN=Hs... [more]
HS74L_HUMAN2.225e-5551.36Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HS... [more]
HSP74_MOUSE2.906e-5550.91Heat shock 70 kDa protein 4 OS=Mus musculus GN=Hsp... [more]
HSP74_PONAB3.795e-5550.91Heat shock 70 kDa protein 4 OS=Pongo abelii GN=HSP... [more]
HSP74_RAT4.956e-5550.45Heat shock 70 kDa protein 4 OS=Rattus norvegicus G... [more]
HSP74_HUMAN4.956e-5550.45Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSP... [more]
HS105_RAT1.350e-5248.18Heat shock protein 105 kDa OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188146 ID=CN188146; Name=CN188146; organism=Citrus sinensis; type=EST; length=654bp
AGTCGACAATTCTCTGATCCTGAGCTGCAAAGGGATCTTAAGTCACTGCC
TTTTGCTGTAACTGAAGGTCCTGATGGTTACCCTTTAATACATGCACGAT
ATTTGGGTGAAACAAGAGTGTTTACTCCAACCCAAGTTTTGGGTATGTTG
CTCTCAAATTTAAAAGCCATAGCTGAGAGTAATTTGAATGCAGCAGTTGT
GGACTGCTGCATTGGAATTCCTGTTTATTTCACTGATCTCCAAAGAAGAG
CTGTTATAGATGCAGCCACAATTGCAGGATTGCATCCGCTTCGTTTGTTT
CATGAAACTACAGCCACAGCATTGGCTTATGGTATTTATAAGACAGATCT
ACCAGAAAATGACCAATTAAATGTTGCGTTTGTTGACATTGGGCATGCAA
GCTTGCAAGTATGCATAGCTGGTTTCAAGAAGGGTCAACTTAAGATATTG
GGTCATTCCTTTGATCGATCCGTGGGTGGTAGAGATTTTGATGAAGTTCT
ATTCCAGCATTTTGCAGCTAAGTTCAAGGAAGAGTACAAGATTGATGTCT
CCCAAAATGCTAGGGCTTCCCTCAGGTTGAGGGTTGCTTGTGAGAAACTG
AAGAAGGTTCTCAGTGCTAATCCCGAGGCACCTTTGAATATTGAATGCTT
AATG
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