CN188142

Overview
NameCN188142
Unique NameCN188142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.014e-74
Identity = 137/176 (77.84%), Postives = 141/176 (80.11%), Query Frame = -3
Query:  167 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNLALETI 694
            IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIG TSGL+HP+TGYMV                 LGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNP+YWHGF                LFGHASNSSR DIVTKCP+PLVKMMGNLALETI
Sbjct:  328 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGGTSGLIHPATGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSRLDIVTKCPVPLVKMMGNLALETI 503          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.183e-57
Identity = 109/176 (61.93%), Postives = 127/176 (72.16%), Query Frame = -3
Query:  167 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNLALETI 694
            I+V+ VIE+EKC+IPMGGPLP IPQ+VMAIG  SG+VHPSTGYMV                 LGSTRMIRG  L+ +VWNGLWP+DRRC  E YSFGMETLLKLDLKGTRR FDAFFDL+P YW GF                LFGH SN +R DIVTKCP+PLV+++GNLA+E++
Sbjct:  323 IKVRSVIEEEKCVIPMGGPLPRIPQNVMAIGGNSGIVHPSTGYMVARSMALAPVLAEAIVKGLGSTRMIRGSQLYHRVWNGLWPLDRRCIGECYSFGMETLLKLDLKGTRRLFDAFFDLDPKYWQGFLSSRLSVKELAILSLCLFGHGSNLTRLDIVTKCPVPLVRLIGNLAIESL 498          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55
Identity = 106/176 (60.23%), Postives = 126/176 (71.59%), Query Frame = -3
Query:  167 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNLALETI 694
            I+V+ V+E+EKC+I MGGPLP IPQ+VMAIG TSG+VHPS+GYMV                 LGSTRMIRG  L+ +VWNGLWP DRR  RE Y FGMETLLKLDL+GTRR FDAFFD++P YWHGF                LFGHASN +R DIVTKC +PLVK++GNLA+E++
Sbjct:  323 IKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGSTRMIRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASNLARLDIVTKCTVPLVKLLGNLAIESL 498          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.093e-46
Identity = 94/173 (54.34%), Postives = 112/173 (64.74%), Query Frame = -3
Query:  182 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGS--TRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNL 694
            I VKR+ EDE+C+IPMGGPLPV+PQ V+ IG T+G+VHPSTGYMV                 LGS  +  +RG  L  +VW  LWPI+RR  REF+ FGM+ LLKLDL  TRRFFDAFFDL PHYWHGF                LF HASN+SR +I+TK  +PL KM+ NL
Sbjct:  324 INVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSNSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSRLEIMTKGTVPLAKMINNL 496          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.569e-46
Identity = 94/171 (54.97%), Postives = 108/171 (63.16%), Query Frame = -3
Query:  182 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNL 694
            I+VK + EDE CLIPMGGPLPV+PQ V+ IG T+G+VHPSTGYMV                 LGS R   G  L   VW  LWPI+RR  REF+ FGM+ LLKLDL  TRRFFDAFFDL P YWHGF                LF HASN+SRF+I+TK  +PLV M+ NL
Sbjct:  325 IKVKSIEEDEHCLIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLGSERSHSGNELSTAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRFEIMTKGTVPLVNMINNL 495          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44
Identity = 92/171 (53.80%), Postives = 106/171 (61.99%), Query Frame = -3
Query:  182 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNL 694
            I+VK + EDE C+IPMGGPLPV+PQ V+ IG T+G+VHPSTGYMV                 L S R   G  L   VW  LWPI+RR  REF+ FGM+ LLKLDL  TRRFFDAFFDL P YWHGF                LF HASN+SR +I+TK  LPLV M+ NL
Sbjct:  323 IKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLSSERSHSGDELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRLEIMTKGTLPLVHMINNL 493          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.558e-44
Identity = 90/171 (52.63%), Postives = 107/171 (62.57%), Query Frame = -3
Query:  182 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNL 694
            IR+K + EDE+C+IPMGGPLPVIPQ V+ IG T+G+VHPSTGYMV                 L S   + G  L   VW  LWPI+RR  REF+ FGM+ LLKLDL+GTRRFFDAFFDL P YWHGF                LF HASN+ + +I+ K  LPLV M+ NL
Sbjct:  328 IRIKSIEEDERCVIPMGGPLPVIPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYLVSDSGLSGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLSLFSHASNTCKLEIMAKGTLPLVNMINNL 498          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = -3
Query:  170 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNLALET 694
            I+VK + EDE C+IPMGG LPVIPQ V+  G T+GLVHPSTGYMV                 LGS + + G  L   VW  LWPI+RR  REF+ FGM+ LLKLDL  TRRFFDAFFDL P YWHGF                LF  ASN+SR +I+TK  LPLV M+ NL  +T
Sbjct:  325 IKVKSIEEDEHCVIPMGGSLPVIPQRVVGTGGTAGLVHPSTGYMVARTLAAAPVVANAIIHYLGSEKDLLGNELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLSLFSRASNTSRIEIMTKGTLPLVNMINNLLQDT 499          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = -3
Query:  314 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLG---STRMIRGRPLHQ---KVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGF 694
            +R+K + E+E   IP+GG LP   Q  +A G+ + +VHP+TGY V                 L    S  M+    +     + WN LWP +R+  R F+ FG+  +L+LD++G R FF AFF +    W GF
Sbjct:  345 VRIKEIYEEEWSYIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLTSSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGF 477          
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 44/157 (28.03%), Postives = 67/157 (42.68%), Query Frame = -3
Query:  224 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIV 694
            + V+ +  +E CL PM  PLP + QSV+  G  + +VHP++GYMV                 L ++  +    L  + W GLWP ++      Y FG+E L++         F  FF L    W+GF                LF  A N  R+ ++
Sbjct:  238 VTVQVIQHEEYCLFPMNLPLPDLTQSVVGFGGAASMVHPASGYMVGALLRRAPDLANAIAAGLNASSSLTTAELATQAWRGLWPTEKIRKHYIYQFGLEKLMRFSEAQLNHHFQTFFGLPKEQWYGFLTNTLSLPELIQAMLRLFAQAPNDVRWGLM 394          
The following BLAST results are available for this feature:
BLAST of CN188142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CCS_CITSI9.014e-7477.84Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
NXS_SOLTU1.183e-5761.93Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
CCS_CAPAN4.207e-5560.23Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
LCYB_ARATH2.093e-4654.34Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_SOLLC3.569e-4654.97Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_CAPAN1.959e-4453.80Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_NARPS2.558e-4452.63Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_TOBAC7.443e-4452.57Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYE_SOLLC2.257e-1634.59Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
LCYB_SYNE77.259e-1528.03Lycopene beta cyclase OS=Synechococcus elongatus (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188142 ID=CN188142; Name=CN188142; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTCAACCATATAATCCGATCTTTTCATTTCTATTA
TCCATCATTTCAAGTGCACGAATGATACCGACATCCACTTTTTAAATTCG
TTGTATTCATAACATGTTACTGTGTACTGCAAGAGACGCTAATTATTCAA
GAACATTTAATCTTCAAATGGTTTCAAGGGCAAGATTCCCCATCATTTTA
ACCAGAGGAAGAGGGCACTTGGTAACAATATCAAACCTGGAAGAATTCGA
GGCGTGTCCAAAGAGAGACAAGCTTAGGCCAGCAAGCTCTGCAAGAGACA
ACCTTGAGGACAGAAACCCATGCCAGTAGTGAGGATTCAAATCAAAGAAA
GCATCAAAGAATCTCCTAGTCCCCTTCAAATCCAGCTTCAACAAAGTCTC
CATACCAAATGAATAAAACTCCCTATTGCATCTTCTGTCAATTGGCCACA
ACCCATTCCACACTTTCTGATGAAGTGGCCTGCCTCTGATCATCCTGGTT
GAGCCAAGGCACTCAGCTATTGCATCAGCCAACGCAGGGGCCAGAGCCAT
GGTCCGAGCCACCATATACCCAGTTGAAGGATGGACTAAACCAGACGTGC
TGCCAATAGCCATCACACTTTGCGGGATCACAGGCAGAGGACCTCCCATT
GGAATCAAACATTTTTCATCTTCAATCACTCTTTTAACTCTAATTC
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