CN188142
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1) HSP 1 Score: 276.559 bits (706), Expect = 9.014e-74 Identity = 137/176 (77.84%), Postives = 141/176 (80.11%), Query Frame = -3 Query: 167 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNLALETI 694 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIG TSGL+HP+TGYMV LGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNP+YWHGF LFGHASNSSR DIVTKCP+PLVKMMGNLALETI Sbjct: 328 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGGTSGLIHPATGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSRLDIVTKCPVPLVKMMGNLALETI 503
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 1.183e-57 Identity = 109/176 (61.93%), Postives = 127/176 (72.16%), Query Frame = -3 Query: 167 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNLALETI 694 I+V+ VIE+EKC+IPMGGPLP IPQ+VMAIG SG+VHPSTGYMV LGSTRMIRG L+ +VWNGLWP+DRRC E YSFGMETLLKLDLKGTRR FDAFFDL+P YW GF LFGH SN +R DIVTKCP+PLV+++GNLA+E++ Sbjct: 323 IKVRSVIEEEKCVIPMGGPLPRIPQNVMAIGGNSGIVHPSTGYMVARSMALAPVLAEAIVKGLGSTRMIRGSQLYHRVWNGLWPLDRRCIGECYSFGMETLLKLDLKGTRRLFDAFFDLDPKYWQGFLSSRLSVKELAILSLCLFGHGSNLTRLDIVTKCPVPLVRLIGNLAIESL 498
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55 Identity = 106/176 (60.23%), Postives = 126/176 (71.59%), Query Frame = -3 Query: 167 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNLALETI 694 I+V+ V+E+EKC+I MGGPLP IPQ+VMAIG TSG+VHPS+GYMV LGSTRMIRG L+ +VWNGLWP DRR RE Y FGMETLLKLDL+GTRR FDAFFD++P YWHGF LFGHASN +R DIVTKC +PLVK++GNLA+E++ Sbjct: 323 IKVRSVLEEEKCVITMGGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESLGSTRMIRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASNLARLDIVTKCTVPLVKLLGNLAIESL 498
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.093e-46 Identity = 94/173 (54.34%), Postives = 112/173 (64.74%), Query Frame = -3 Query: 182 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGS--TRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNL 694 I VKR+ EDE+C+IPMGGPLPV+PQ V+ IG T+G+VHPSTGYMV LGS + +RG L +VW LWPI+RR REF+ FGM+ LLKLDL TRRFFDAFFDL PHYWHGF LF HASN+SR +I+TK +PL KM+ NL Sbjct: 324 INVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLGSPSSNSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSRLEIMTKGTVPLAKMINNL 496
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 3.569e-46 Identity = 94/171 (54.97%), Postives = 108/171 (63.16%), Query Frame = -3 Query: 182 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNL 694 I+VK + EDE CLIPMGGPLPV+PQ V+ IG T+G+VHPSTGYMV LGS R G L VW LWPI+RR REF+ FGM+ LLKLDL TRRFFDAFFDL P YWHGF LF HASN+SRF+I+TK +PLV M+ NL Sbjct: 325 IKVKSIEEDEHCLIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLGSERSHSGNELSTAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRFEIMTKGTVPLVNMINNL 495
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44 Identity = 92/171 (53.80%), Postives = 106/171 (61.99%), Query Frame = -3 Query: 182 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNL 694 I+VK + EDE C+IPMGGPLPV+PQ V+ IG T+G+VHPSTGYMV L S R G L VW LWPI+RR REF+ FGM+ LLKLDL TRRFFDAFFDL P YWHGF LF HASN+SR +I+TK LPLV M+ NL Sbjct: 323 IKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLSSERSHSGDELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRLEIMTKGTLPLVHMINNL 493
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.558e-44 Identity = 90/171 (52.63%), Postives = 107/171 (62.57%), Query Frame = -3 Query: 182 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNL 694 IR+K + EDE+C+IPMGGPLPVIPQ V+ IG T+G+VHPSTGYMV L S + G L VW LWPI+RR REF+ FGM+ LLKLDL+GTRRFFDAFFDL P YWHGF LF HASN+ + +I+ K LPLV M+ NL Sbjct: 328 IRIKSIEEDERCVIPMGGPLPVIPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYLVSDSGLSGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLSLFSHASNTCKLEIMAKGTLPLVNMINNL 498
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44 Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = -3 Query: 170 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIVTKCPLPLVKMMGNLALET 694 I+VK + EDE C+IPMGG LPVIPQ V+ G T+GLVHPSTGYMV LGS + + G L VW LWPI+RR REF+ FGM+ LLKLDL TRRFFDAFFDL P YWHGF LF ASN+SR +I+TK LPLV M+ NL +T Sbjct: 325 IKVKSIEEDEHCVIPMGGSLPVIPQRVVGTGGTAGLVHPSTGYMVARTLAAAPVVANAIIHYLGSEKDLLGNELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLSLFSRASNTSRIEIMTKGTLPLVNMINNLLQDT 499
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16 Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = -3 Query: 314 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLG---STRMIRGRPLHQ---KVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGF 694 +R+K + E+E IP+GG LP Q +A G+ + +VHP+TGY V L S M+ + + WN LWP +R+ R F+ FG+ +L+LD++G R FF AFF + W GF Sbjct: 345 VRIKEIYEEEWSYIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLTSSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGF 477
BLAST of CN188142 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 44/157 (28.03%), Postives = 67/157 (42.68%), Query Frame = -3 Query: 224 IRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVXXXXXXXXXXXXXXXXXLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPHYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRFDIV 694 + V+ + +E CL PM PLP + QSV+ G + +VHP++GYMV L ++ + L + W GLWP ++ Y FG+E L++ F FF L W+GF LF A N R+ ++ Sbjct: 238 VTVQVIQHEEYCLFPMNLPLPDLTQSVVGFGGAASMVHPASGYMVGALLRRAPDLANAIAAGLNASSSLTTAELATQAWRGLWPTEKIRKHYIYQFGLEKLMRFSEAQLNHHFQTFFGLPKEQWYGFLTNTLSLPELIQAMLRLFAQAPNDVRWGLM 394 The following BLAST results are available for this feature:
BLAST of CN188142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188142 ID=CN188142; Name=CN188142; organism=Citrus sinensis; type=EST; length=696bpback to top |