CN188139

Overview
NameCN188139
Unique NameCN188139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4219 contig Csv1_Contig4219:28..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188139 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.118e-22
Identity = 66/186 (35.48%), Postives = 100/186 (53.76%), Query Frame = -1
Query:  196 SNAEEQQRLDAAESIKTVCSVTQNPDSCFXXXXXXXXXXXXXTKPDPEVILKLSLQVNVNHFSNITSSIKSLYGN--HLEVALRDCVDQLRDASSRLNDSMSELNATL----TDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVA----DEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH 723
            S++  Q  L  A S+K VC  T+ P SCF                DPE++ KLSL+V ++  S+  S +++       L+ A+  C     DA  RLNDS+S L        +  +V++++TW+SAA+TD++TCLD + E+ ST A     E++T M+ S E  S SLAI+  I  LL +F   +H
Sbjct:   63 SDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTT----DPELLFKLSLRVAIDELSSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGLLSRFETPIH 244          
BLAST of CN188139 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 65/194 (33.51%), Postives = 99/194 (51.03%), Query Frame = -1
Query:  196 ESNAEEQQRLDAAESIKTVCSVTQNPDSCFXXXXXXXXXXXXXTKPDPEVILKLSLQVNVNHFSNITSSIKSLY----GNHLEVALRDCVDQLRDASSRLNDSMS-----ELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEM--------GSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH 726
            ES       L  + S+K +CSVT+ P+SC                 DPE + KLSL+V ++   +I+   + L        ++ ALR C D + DA  RLND++S     E   TL+   + D++TW+SA +TD ETC D L+E+         ST+   +K+ M +S E  S SLAI++ I + L   G+ +H
Sbjct:   58 ESTPSPPPELTPSTSLKAICSVTRFPESCISSISKLPSSNTT----DPETLFKLSLKVIIDELDSISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILSALSDLGIPIH 247          
BLAST of CN188139 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 66/180 (36.67%), Postives = 94/180 (52.22%), Query Frame = -1
Query:  196 LDAAESIKTVCSVTQNPDSCFXXXXXXXXXXXXXTKPDPEVILKLSLQVNVNHFSNITSSIKSLY----GNHLEVALRDCVDQLRDASSRLNDSMSELNAT-----LTDRTVNDIQTWISAAMTDEETCLDGLEEM---GSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLHMH 699
            L  A S+KTVCSVT  P SCF                DPEVI +LSLQV ++  ++I    K L        L+ AL  C   L  A  R+N+++S +        L   T++D+ TW+SAA+T   TCLD L+E+    S +  ++K+ M  S E  S SLAI+A I + +  FG+ +H
Sbjct:   71 LTPAASLKTVCSVTNYPVSCFSSISKLPLSNTT----DPEVIFRLSLQVVIDELNSIVELPKKLAEETDDEGLKSALSVCEHLLDLAIDRVNETVSAMEVVDGKKILNAATIDDLLTWLSAAVTYHGTCLDALDEISHTNSAIPLKLKSGMVNSTEFTSNSLAIVAKILSTISDFGIPIH 246          

HSP 2 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 63/185 (34.05%), Postives = 94/185 (50.81%), Query Frame = -1
Query:  202 RLDAAESIKTVCSVTQNPDSCFXXXXXXXXXXXXXTKPDPEVILKLSLQVNVNHFSNITSSIKSLY----GNHLEVALRDCVDQLRDASSRLNDSMSELNAT------LTDRTVNDIQTWISAAMTDEETCLDGLEEM--------GSTVADEVKTMMKKSKELLSYSLAIIANIRTLLQKFGLH 702
            +L  A S++ VCSVT+ P SC                 DPE + +LSLQV +N  ++I    K L        L+ +L  C D   DA   +ND++S +         L   T+++IQTW+SAA+TD +TCLD L+E+         S ++ ++K+ M  S++  S SLAIIA       KF +H
Sbjct:  264 KLTPAASLRNVCSVTRYPASCVSSISKLPSSNTT----DPEALFRLSLQVVINELNSIAGLPKKLAEETDDERLKSSLSVCGDVFNDAIDIVNDTISTMEEVGDGKKILKSSTIDEIQTWLSAAVTDHDTCLDALDELSQNKTEYANSPISLKLKSAMVNSRKFTSNSLAIIA-------KFPIH 437          

HSP 3 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 59/194 (30.41%), Postives = 92/194 (47.42%), Query Frame = -1
Query:  232 IGLMLQFLIRESNAEEQQRL------DAAESIKTVCSVTQNPDSCFXXXXXXXXXXXXXTKPDPEVILKLSLQVNVNHFSNITSSIKSLY----GNHLEVALRDCVDQLRDASSRLNDSMSELNAT-------LTDRTVNDIQTWISAAMTDEETCLDGLEE--MGSTVADEVKTMMKKSKELLSYSLAIIANI 756
            + ++ +F I E +  +  RL        +  ++TVC+VT  P SC                 DP+V+ +LSLQV  +  ++I    K L        L+ AL  C D    A   +ND++S L+         L   T+ D+ TW+S+A+TD  TC D L+E    S +  ++K+ M  S E  S SLAI+A +
Sbjct:  428 LAIIAKFPIHERHGVQSPRLRKSPHPTPSSVLRTVCNVTNYPASCISSISKLPLSKTTT---DPKVLFRLSLQVTFDELNSIVGLPKKLAEETNDEGLKSALSVCADVFDLAVDSVNDTISSLDEVISGGKKNLNSSTIGDLITWLSSAVTDIGTCGDTLDEDNYNSPIPQKLKSAMVNSTEFTSNSLAIVAQV 618          
The following BLAST results are available for this feature:
BLAST of CN188139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PME3_PHAVU1.118e-2235.48Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME1_ARATH3.252e-2233.51Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME26_ARATH9.790e-1936.67Putative pectinesterase/pectinesterase inhibitor 2... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005I24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188139 ID=CN188139; Name=CN188139; organism=Citrus sinensis; type=EST; length=762bp
GAGGTATTTATTTGAATAACCTTGGGTCGGCATATGTTTATTGACAATAA
GCTCGGCCCAAAGAGAATAAAAACAAAGAGGTGAAACGAATTTATCAGAA
TACACAAGTGATTGACATGGTCTTGATTGATGCCCACCGACAAACGAATA
TTTCTGAAATTCGGAGATTTTTTTTTGAGTGTTCAATTTCAATCAATGCA
TATGGAGGCCAAATTTCTGAAGAAGTGTTCGGATGTTAGCAATAATAGCC
AGGCTGTAACTGAGTAACTCCTTTGACTTTTTCATCATGGTCTTGACTTC
ATCAGCCACCGTTGATCCCATCTCCTCCAATCCGTCCAAGCAAGTTTCTT
CGTCCGTCATGGCCGCGCTGATCCACGTCTGGATGTCGTTGACAGTCCTG
TCAGTCAACGTGGCGTTCAACTCAGACATGGAGTCGTTGAGTCGACTCGA
CGCGTCCCGCAGCTGATCCACGCAGTCGCGTAAAGCAACCTCAAGGTGAT
TACCGTAAAGACTTTTAATCGAAGAAGTGATGTTTGAGAAGTGATTGACG
TTGACTTGCAGAGAGAGCTTCAAGATCACTTCTGGGTCTGGTTTTGTCGT
TGTCGATGAGATGTTGAGAGAAGAAGATAAGGCGGTGAAGCATGAATCCG
GGTTCTGGGTAACGCTGCACACCGTTTTGATCGACTCGGCAGCGTCCAGT
CGCTGTTGTTCTTCCGCGTTTGACTCCCGAATGAGAAACTGCAGCATCAG
ACCAATGATCAA
back to top