CN188138

Overview
NameCN188138
Unique NameCN188138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7513 contig Csv1_Contig7513:95..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = -2
Query:  214 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQ-AVNSPEDTGSAAKILQFLVPMLILGIAFAFGYFSKKE 597
            KVL F+EV+KH      WL+ISGKVY+VTPF++DHP  DEV L++T KDAT DFED+GHSD+AR+MM+K+ IGEIDSSSVPA R    PQQ A N  +      KILQFLVP+LILG+A    +++KK+
Sbjct:    6 KVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTKKD 134          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.388e-35
Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = -2
Query:  214 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPP-QQAVNSPEDTGSAAKILQFLVPMLILGIAFAFGYFSKKE 597
            KVL F+EV++H      WL+ISGKVY+VTPF++DHP  DEV L++T KDAT DFED+GHSD+AR+MMEK++IGEIDSS+VPA R    P Q A N  +      KILQFLVP+LILG+A     ++KKE
Sbjct:    6 KVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTKKE 134          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33
Identity = 69/128 (53.91%), Postives = 94/128 (73.44%), Query Frame = -2
Query:  217 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQA-VNSPEDTGSAAKILQFLVPMLILGIAFAFGYFSKK 597
            KV    EV+ H +    WL+ISGKVYNVT FLEDHP   EV L+AT KDAT+DFED+GHS SAR M++++++G+IDSS++P K K TPP+Q   N  + T    K+LQFLVP++ILG+AF   +++K+
Sbjct:    6 KVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQ 133          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 67/128 (52.34%), Postives = 95/128 (74.22%), Query Frame = -2
Query:  217 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQA-VNSPEDTGSAAKILQFLVPMLILGIAFAFGYFSKK 597
            KV    EV++H +    WLVISGKVY+VT FL+DHP  DEV L+AT KDAT+DFED+GHS SAR M++++++G+IDS+++P K K TPP Q   N  + +    K+LQFLVP++ILG+AF   +++K+
Sbjct:    6 KVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQ 133          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = -2
Query:  214 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQA-VNSPEDTGSAAKILQFLVPMLILGIAFAFGYFSKKE 597
            KV   +EVAKH  +D  WL+I GKVYNV+ FLEDHP  D+V L++T KDAT+DFED+GHS +AR MM+++++G+ID+S++PA+ K  PP+Q   N  +      KILQFLVP+ ILG+A A   ++K E
Sbjct:    7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKSE 135          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 65/129 (50.39%), Postives = 96/129 (74.42%), Query Frame = -2
Query:  220 MPKVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQAVNSPEDTGS-AAKILQFLVPMLILGIAFAFGYFSK 603
            M K+    EVA+H +    WL+I+GKVY+VT FLEDHP  D+V L+AT KDAT+DFED+GHS SA+ M++++++G+IDSSS+P++ K TPP+Q + +P+ T     K+LQFLVP++IL  A    +++K
Sbjct:    1 MGKIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTK 129          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.227e-31
Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = -2
Query:  220 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQA-VNSPEDTGSAAKILQFLVPMLILGIAFAFGYFSK 597
            K+    EV++H      W+VI+GKVYNVT FLEDHP  D+V L++T KDAT+DFED+GHS+SAREMME++++GEID +++P K K TPP+Q   N  + +    K+LQFLVP+ ILG+A     ++K
Sbjct:    6 KIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTK 132          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = -2
Query:  217 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQAVNSPEDTGS-AAKILQFLVPMLILGIAFAFGYFSKK 597
            KV    EV++H   +  WLVI GKVY+VT FL+DHP   +V L++T KDAT+DFED+GHS SAR MM++  +G+IDSS++P K   TPP+Q + + + T     K+LQFLVP++ILG+A    ++ K+
Sbjct:    5 KVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQ 132          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  226 EVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGE-IDSSSVPAKRKSTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFGYF 579
            EVAKH      WL+I   +Y+VT FL +HP  +EV +    KDATE+FED+GHS+ AR+MM+K+ IGE ++S      +KS P      S E     + +  +LVP+++  +A  F  F
Sbjct:   13 EVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVESERTSVAQKSEPTW----STEQQTEESSVKSWLVPLVLCLVATLFYKF 127          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 44/121 (36.36%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  241 MPKVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAF 603
            MPKV  +QEVA+H   +  W++I  KVY+V+ F ++HP  DE+ +    +DATE F D+GHSD A  +++  +IG++D +S   +R S    + V++ E+    +  L  ++ +L+LG+A+
Sbjct:    1 MPKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTS---ERVSV---EKVSTSENQSKGSGTLVVILAILMLGVAY 115          
The following BLAST results are available for this feature:
BLAST of CN188138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CYB51_ARATH2.821e-3659.69Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB2.388e-3558.91Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5S_TOBAC1.712e-3353.91Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_TOBAC4.980e-3352.34Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5_ORYSJ1.109e-3252.71Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_BOROF9.392e-3250.39Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB52_ARATH1.227e-3151.97Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_CUSRE1.148e-2949.22Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5_DROME6.534e-1740.34Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB5_YEAST1.115e-1636.36Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005I24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188138 ID=CN188138; Name=CN188138; organism=Citrus sinensis; type=EST; length=634bp
GCGGCCATTTCACTGTATTACTGCTTCAGTATAACTTTTATCACATCCTT
CAACGAGGATGCACGAAGCACCCATTATTATTGCTACACATAGTTTAGTA
TCAAAACAAATCCTGATACCAAGTGCCAATTGAAGTTCTAATACTATAGG
ATAGGGAGTAAACTAACGAAGAGGTATCTGGTTCGGTTTTGCAATTCATA
CAATGCGTCACTCTTCTTTCTTGGAAAAATAACCGAAAGCAAATGCTATG
CCCAGGATCAACATCGGTACCAGGAACTGTAAAATCTTTGCTGCAGATCC
GGTGTCTTCGGGACTATTAACTGCTTGTTGGGGTGGAGTGGACTTCCTTT
TTGCTGGAACACTGGAGCTATCAATCTCACCAATGTGGAATTTTTCCATC
ATCTCTCTGGCAGAATCGCTGTGACCCAAATCTTCAAAGTCCTCTGTTGC
GTCCTTCTCAGTAGCAGCTAGGAAGACTTCATCGACAACAGGATGATCTT
CCAGAAACGGAGTCACATTATAGACCTTTCCAGAAATTACAAGCCAGCCA
ACATCTCTATGAATGTGCTTTGCCACCTCTTGAAAATCAAGAACTTTGGG
CATTCTTTTCTGGCTATTTCAGCTACTGCTCACG
back to top