CK939295

Overview
NameCK939295
Unique NameCK939295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:5..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.893e-55
Identity = 111/160 (69.38%), Postives = 124/160 (77.50%), Query Frame = 2
Query:   80 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            MDFR+MGL+S PLF TLQHMM+M  D + DNK+ NAPT +YVRDAKAMA TPADVKEYPNSYVF +DMPGLKSGDIKVQVEDDN+LLI            AKY+RMERRVGK MRKFVLPENAN +AISAVCQDGVL+VTV            TI+VK+A
Sbjct:    1 MDFRVMGLES-PLFHTLQHMMDMSEDGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.708e-53
Identity = 107/160 (66.88%), Postives = 121/160 (75.62%), Query Frame = 2
Query:   80 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            MD R++G+D++PLF TL HMME   +DS      NAP++ YVRDAKAMA TPADVKEYPNSYVF+VDMPGLKSGDIKVQVE+DNVLLIS           AK++RMERRVGKFMRKF LPENAN +AISAVCQDGVLTVTV            TIEVK+A
Sbjct:    1 MDLRLLGIDNTPLFHTLHHMMEAAGEDSV-----NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.538e-48
Identity = 101/155 (65.16%), Postives = 118/155 (76.13%), Query Frame = 2
Query:   95 MGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            M LDS PLF+TL H+M++   D    K+ NAPTRTYVRDAKAMA TPADVKE+PNSYVF+VDMPG+KSGDIKVQVED+NVLLIS            KY++MERR+GK MRKFVLPENAN+EAISA+ QDGVLTVTV+           TI+VK+A
Sbjct:    1 MDLDS-PLFNTLHHIMDL--TDDTTEKNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.591e-45
Identity = 103/160 (64.38%), Postives = 114/160 (71.25%), Query Frame = 2
Query:   80 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS-XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKI 556
            MD R+MG D  PLF    H+M+   DD + N S  AP+RT++ DAKAMA TPADVKEYPNSYVFI+DMPGLKSGDIKVQV+ DNVL IS            AKYVRMERRVGK MRKFVLPENAN E I+AVCQDGVLTVTV+           TIEVKI
Sbjct:    1 MDLRLMGFDH-PLF---HHIMDYAGDDKSSNSS--APSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.140e-43
Identity = 94/157 (59.87%), Postives = 113/157 (71.97%), Query Frame = 2
Query:   92 IMGLDSSPLFSTLQHMMEMGADDSADNKSFNA-PTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            +MG D  PL   L +++E   D++  NKS N+ P+R YVRDA+AMA TPADVKE PNSYVFIVDMPGLKSGDIKVQVE DNVL+IS            KYVRMERR+GKFM+KF LPE+AN + ISA+CQDGVLTVTV+           TI+V++A
Sbjct:    6 LMGFD--PLLRNLHYILEATDDNTTGNKSNNSGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.172e-42
Identity = 97/167 (58.08%), Postives = 111/167 (66.47%), Query Frame = 2
Query:   80 MDFRIMGLDS----SPLFSTLQHMMEMGAD-DSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS--XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            MD R  GL +      L ST+Q M++   D D A       P R YVRDAKAMA TPADVKEYPNSYVFI DMPG+K+ +IKVQVEDDNVL++S              KY+RMERRVGKFMRKFVLPENANVEAI+AV QDGVL VTV+           T+EVK+A
Sbjct:    1 MDLRNFGLSNFGLEPQLLSTIQDMLDFADDHDRAGRAPPEQPIRAYVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.378e-41
Identity = 90/165 (54.55%), Postives = 118/165 (71.52%), Query Frame = 2
Query:   80 MDFRIMGLDSSPLFSTLQHMMEMGADDSA---DNK--SFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            MD  + GL++ PL + LQH++++   D+    DNK  S  + TRTYVRDA+AMA TPADVKE P +Y F+VDMPGL +GDI+VQVED+ VL++S           AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIEVK+A
Sbjct:    1 MDAVMFGLET-PLMAALQHLLDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.541e-40
Identity = 91/163 (55.83%), Postives = 114/163 (69.94%), Query Frame = 2
Query:   80 MDFRIMGLDSSPLFSTLQHMMEMGADDSA---DNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            MD R+ GL++ PL   LQH++++   D+    D      PTRTYV DA+AMA TPADVKE P +Y F+VDMPGL +GDIKVQVED+ VL+IS           AKY+RMERR+GKFMRKFVLP+NA+++ ISAVC+DGVLTVTV+           TIEVK+A
Sbjct:    1 MDGRMFGLET-PLMVALQHLLDVPDGDAGAGGDKAGGGGPTRTYVADARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVIS-GERRREEREDAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 88/167 (52.69%), Postives = 115/167 (68.86%), Query Frame = 2
Query:   80 MDFRIMGLDSSPLFSTLQHMMEM--GADDSADNK-SFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS----XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            M+  + GL++ PL + LQH++++  G   +A  + +   PTR YVRDA+AMA TPADVK+ P +Y F+VDMPGLKS DIKVQVE++ +L+IS                KY+RMERR+GKFMRKFVLP+NA+V+ ISAVCQDGVLTVTV+           TIEVK+A
Sbjct:    1 MESAMFGLET-PLMTALQHLLDIPDGEGGAAGKQGATGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
BLAST of CK939295 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.460e-38
Identity = 85/160 (53.12%), Postives = 112/160 (70.00%), Query Frame = 2
Query:   80 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 559
            MD R+ GL++ P  + L H++++   D A   +    TRTYVRDA+AMA TPADVKE   +Y F+VDMPGL +GDI+VQVED+ VL+IS           AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIE+K+A
Sbjct:    1 MDARMFGLET-PRVAALHHLLDVPDGDKAGGGA----TRTYVRDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVIS-GERRREEREDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
The following BLAST results are available for this feature:
BLAST of CK939295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSP21_SOYBN2.893e-5569.3817.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_SOLPE2.708e-5366.8817.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA1.538e-4865.1617.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI1.591e-4564.3817.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_HELAN1.140e-4359.8717.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP22_IPONI8.172e-4258.0818.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_MAIZE2.378e-4154.5517.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_MAIZE1.541e-4055.8317.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP18_ORYSJ1.442e-3852.6918.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP23_MAIZE2.460e-3853.1317.0 kDa class II heat shock protein OS=Zea mays G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_E10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939295 ID=CK939295; Name=CK939295; organism=Citrus sinensis; type=EST; length=760bp
GGGGAACAAAATACAAACAAACGAACGANNNCTCATTTAGCAGTAGCGAA
CATCACCAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCATGGGT
TTGGACTCATCGCCACTCTTTTCAACTCTGCAGCATATGATGGAGATGGG
GGCGGACGACTCCGCTGACAACAAGTCATTCAACGCGCCGACGCGCACGT
ACGTGAGAGACGCCAAGGCAATGGCGGGGACGCCTGCGGACGTAAAGGAG
TATCCGAACTCGTACGTGTTCATCGTCGACATGCCCGGACTGAAGTCGGG
GGACATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGAG
AGAGGAAGCGGGAGGAGGAGAAAGAGGGGGCCAAGTATGTGAGAATGGAG
AGGAGGGTCGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAA
CGTTGAAGCCATTTCGGCTGTGTGTCAGGACGGAGTGTTGACTGTGACCG
TCGATAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTT
AAGATTGCTTGAACTTTAAAGAGAGAGAATATGCTGGATTGTGGGTGCTG
ATGTCTTTTCTATTTGCCGGTTGTTGTTATGAATAATTTTGCTTGTGGGT
GTGACGGTACTATGCCTCTGTAACCTCCTCTTCCTTTTTCTTTTTTTGTT
TTTCTTCCCTTTTTTTCGAAAATTCTCTCTGTTCACTGGTTTGCGGTTCG
GTCTTTAGCA
back to top