CK939289

Overview
NameCK939289
Unique NameCK939289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939289 vs. ExPASy Swiss-Prot
Match: BH060_ARATH (Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 2
Query:  452 QISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGMVMPVMWPEL-----QAHGNRQQYQ---QQWHHFDGHHQPLLGGAEE 745
            +I GTALVLDEIINHVQSLQRQVE LSMRLAAVNPRIDFNLD++  +E+GSL+D SF    M + WP+      Q+  +RQ  Q   QQW  FDG +QP+ G  E+
Sbjct:  289 RIQGTALVLDEIINHVQSLQRQVEMLSMRLAAVNPRIDFNLDTILASENGSLMDGSFNAAPMQLAWPQQAIETEQSFHHRQLQQPPTQQW-PFDGLNQPVWGREED 393          
BLAST of CK939289 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.920e-22
Identity = 60/102 (58.82%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  452 QISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGMVMPVMWPELQAHGNRQQYQ--QQWHHFDGHHQPLLGGAEESH 751
            +I GTALVLDEIINHVQ+LQRQVE LSMRLAAVNPRIDFNLDS+  +E+GSL+D SF                N + Y   QQW  FDG+HQP  G  E+ H
Sbjct:  223 KIQGTALVLDEIINHVQTLQRQVEMLSMRLAAVNPRIDFNLDSILASENGSLMDGSF----------------NAESYHQLQQW-PFDGYHQPEWGREEDHH 307          
BLAST of CK939289 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  452 QISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAE-----SGSLIDSSFPGMVMPVMWPELQAHGNRQQ 682
            +++G A++LDEIIN+VQSLQRQVEFLSM+LA VNP++DFNL+ L   +     +GS   + FP   M + +P L  HG  QQ
Sbjct:  341 KVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPN-MSMAYPPL-PHGFMQQ 420          
BLAST of CK939289 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  452 QISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGS 604
            +I+G A +LDEIIN+VQSLQRQ+EFLSM+LA VNPR DF++D +F  E  S
Sbjct:  210 KITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEVAS 260          
BLAST of CK939289 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 31/44 (70.45%), Postives = 42/44 (95.45%), Query Frame = 2
Query:  452 QISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSL 583
            +++G AL+LDEIIN+VQSLQRQVEFLSM+L++VN R+DFN+D+L
Sbjct:  296 KVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDAL 339          
The following BLAST results are available for this feature:
BLAST of CK939289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BH060_ARATH4.570e-2459.43Transcription factor bHLH60 OS=Arabidopsis thalian... [more]
BH048_ARATH1.920e-2258.82Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BH049_ARATH4.012e-1251.22Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH063_ARATH5.794e-1164.71Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH062_ARATH5.794e-1170.45Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004752_G11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939289 ID=CK939289; Name=CK939289; organism=Citrus sinensis; type=EST; length=766bp
GGGAGGTCTAATTCTAGTGGTAAAGATCAGTCTTCCTAGGATTCAGGTCG
TGGGTTCGAATTTGGGTGCCTGAGTTAATAATTAAAAAAAAAGAGAAAGG
AAAAAAAATAAAAAAGTTGAATCTCAATGATGAGATACTGACAAGGTAAT
TTGATTTGTGGGCTAAAAGAGGTCTTGGGTGAAAATTTTCAAGTAGAAGC
ATCCCTGGAGATTATAAATTAGGCCCTTGTTATTTTTTCTGAATCTTTTG
ATGGAAAAATGCCTTTTGAATCAAACATCGAGTTTATTTTTTTGCTGTAA
AAGGGGAGATGGTTTGCATCATAACAGATTCCTCTGTAACCACACCTATA
TTTAATATCATTGGAGACAATGAGTCAAGACGCTATTTTTCAGCGTTCTT
TGTGCAGCGGCTGATACTTCAATGGCGTCTAACATGAAAAGTTGTGTTTT
GCAGATTTCTGGGACAGCATTAGTTTTAGATGAGATCATCAACCATGTGC
AGTCGTTACAGCGTCAAGTGGAGTTCTTGTCAATGAGACTTGCAGCAGTC
AATCCAAGGATTGATTTCAATCTGGACAGCTTATTTGTTGCAGAGAGTGG
ATCGTTAATCGACAGTAGCTTCCCTGGCATGGTTATGCCTGTAATGTGGC
CTGAACTCCAAGCCCATGGAAACCGACAACAGTATCAACAGCAATGGCAT
CATTTTGATGGGCATCACCAGCCTCTTTTGGGAGGAGCAGAAGAAAGCCA
TAACTTTGTTACTCCC
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