CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: AUHM_HUMAN (Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.389e-30
Identity = 66/151 (43.71%), Postives = 96/151 (63.58%), Query Frame = 2
Query:  110 YQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            Y KN+L  ++++ L  A + +  D     ++IRS VP +F AGADLKER +MS SE+  +V+ +R+  + +  L +PTIA ID             CD+R+   +A +GL ET LAIIPG GGTQRLPR +G S+AK++IF+ R + GK+A
Sbjct:   98 YGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEA 248          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: AUHM_MOUSE (Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.814e-30
Identity = 67/151 (44.37%), Postives = 95/151 (62.91%), Query Frame = 2
Query:  110 YQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            Y KNAL  ++L+ L  A + +  D     ++IRS VP +F AGADLKER +M  SE+  +V+ +RS  + +  L +PTIA ID             CD+R+   +A +GL ET LAIIPG GGTQRLPR +G S+AK++IF+ R + G++A
Sbjct:   73 YGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEA 223          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: YNGF_BACSU (Putative enoyl-CoA hydratase/isomerase yngF OS=Bacillus subtilis GN=yngF PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.469e-29
Identity = 69/148 (46.62%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            NAL  +MLR L    + I  +S+   V++  +  K F AGADLKER ++   ++   V+ ++ T + L+AL  P IA I+             CDLRI  EAA+LGLPETGLAIIPGAGGTQRLPRL+G+  AK+ I+TGR+V+  +A
Sbjct:   26 NALSAEMLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKEDQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEA 173          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: ECHD2_MOUSE (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.836e-29
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 2
Query:  116 KNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            +NALG   +  L  A   + ED    V++ RS+V  VF AGADLKER QMS  E+  +V  LR   S + A  +PTIA +D             CDLRI   +A++GL ET   ++PGAGGTQRLPR +G ++AK++IFTGR+++G  A
Sbjct:   57 RNALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQA 205          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: ECHD2_BOVIN (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Bos taurus GN=ECHDC2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 66/149 (44.30%), Postives = 90/149 (60.40%), Query Frame = 2
Query:  116 KNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            +NALG   +  L  A   + ED    V++ RS V  VF AGADLKER QMS +E+  +V  LR   + + A   PTIA +D             CDLR+   +A++GL ET   ++PGAGGTQRLPR +G ++AK++IFTGR++SG  A
Sbjct:   57 RNALGNVFVSQLLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGAQA 205          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: AUHM_DICDI (Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 69/149 (46.31%), Postives = 93/149 (62.42%), Query Frame = 2
Query:  116 KNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            KNALG +++         +       VV++RS V  VF +GADLKER  MS  E   +V++LRS+F+ LE L++PTIA I+             CD R+  +++ +GLPETGLAIIPGAGGTQRLPRL+G   AK++IFTG  +  K A
Sbjct:   68 KNALGKNLMNQFRSHLNELRFCPDTRVVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVGGGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRAKELIFTGAILDSKRA 216          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: ECHD2_HUMAN (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Homo sapiens GN=ECHDC2 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.218e-28
Identity = 65/149 (43.62%), Postives = 90/149 (60.40%), Query Frame = 2
Query:  116 KNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            +NALG   +  L      + ED    V++ RS V  VF AGADLKER QMS +E+  +V  LR   + + A   PTIA +D             CDLR+   +A++GL ET   ++PGAGGTQRLPR +G ++AK++IFTGR++SG +A
Sbjct:   53 RNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEA 201          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: CRT_CLOAB (3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum GN=crt PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 54/148 (36.49%), Postives = 74/148 (50.00%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            NAL +D L+ + +    I  DS    V++  +  K F AGAD+ E ++M+  E   +       F  LE L  P IA ++             CD+RI    A  G PE GL I PG GGTQRL RLVG  +AK +IFT + +   +A
Sbjct:   26 NALNSDTLKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKEMNTIEGRKFGILGNKVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNARFGQPEVGLGITPGFGGTQRLSRLVGMGMAKQLIFTAQNIKADEA 173          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: ECHM_RAT (Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17
Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            NAL   ++  L  A ET  ED +   +++     K F+AGAD+KE +  +  +   Y     S +  +  ++ P IA ++             CD+   GE A  G PE  L  IPGAGGTQRL R VGKS+A +++ TG ++S +DA
Sbjct:   59 NALCNGLIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQDC--YSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDA 203          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: ECHM_MOUSE (Enoyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.004e-17
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            NAL   ++  L  A ET  +D +   +++     K F+AGAD+KE +  +  +   Y +   S +  +  ++ P IA ++             CD+   GE A  G PE  L  IPGAGGTQRL R VGKS+A +++ TG ++S +DA
Sbjct:   59 NALCNGLIEELNQALETFEQDPAVGAIVLTGG-DKAFAAGADIKEMQNRTFQDC--YSSKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDA 203          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
AUHM_HUMAN1.389e-3043.71Methylglutaconyl-CoA hydratase, mitochondrial OS=H... [more]
AUHM_MOUSE1.814e-3044.37Methylglutaconyl-CoA hydratase, mitochondrial OS=M... [more]
YNGF_BACSU4.469e-2946.62Putative enoyl-CoA hydratase/isomerase yngF OS=Bac... [more]
ECHD2_MOUSE5.836e-2944.97Enoyl-CoA hydratase domain-containing protein 2, m... [more]
ECHD2_BOVIN1.300e-2844.30Enoyl-CoA hydratase domain-containing protein 2, m... [more]
AUHM_DICDI1.300e-2846.31Methylglutaconyl-CoA hydratase, mitochondrial OS=D... [more]
ECHD2_HUMAN2.218e-2843.62Enoyl-CoA hydratase domain-containing protein 2, m... [more]
CRT_CLOAB5.475e-1936.493-hydroxybutyryl-CoA dehydratase OS=Clostridium ac... [more]
ECHM_RAT1.349e-1735.14Enoyl-CoA hydratase, mitochondrial OS=Rattus norve... [more]
ECHM_MOUSE3.004e-1734.46Enoyl-CoA hydratase, mitochondrial OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
back to top