CK939284

Overview
NameCK939284
Unique NameCK939284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC3_ARATH (Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.859e-58
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 2
Query:   29 MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            MASF+EAPPGNPKAGEKIF+TKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK MAV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct:    1 MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_CUCMA (Cytochrome c OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.090e-56
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 2
Query:   32 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            ASF+EAPPGN KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK  AVIWEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_ORYSJ (Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.859e-56
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   29 MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            MASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS ANK MAVIWEE TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_ORYSI (Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.859e-56
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   29 MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            MASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS ANK MAVIWEE TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_PHAAU (Cytochrome c OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.410e-56
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 2
Query:   32 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            ASF+EAPPGN K+GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYS ANK MAVIWEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Sbjct:    1 ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_SAMNI (Cytochrome c OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.574e-55
Identity = 103/111 (92.79%), Postives = 105/111 (94.59%), Query Frame = 2
Query:   32 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            ASF EAPPGNPKAGEKIFKTKC QCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAANK MAV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFAEAPPGNPKAGEKIFKTKCNQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_ABUTH (Cytochrome c OS=Abutilon theophrasti PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.506e-55
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = 2
Query:   32 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            ASF++APPG+ KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK MAV W E TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFQZAPPGBAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_ARUMA (Cytochrome c OS=Arum maculatum PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.580e-55
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   32 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            ASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAANK MAVIWEE TLY+YLLNP KYIPGTKMVFPGL KPQ+RADLIAYLKESTA
Sbjct:    1 ASFAEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEESTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLIAYLKESTA 111          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_BRAOL (Cytochrome c OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.981e-55
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 2
Query:   32 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            ASF+EAPPGN KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAANK  AV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_BRANA (Cytochrome c OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.981e-55
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 2
Query:   32 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            ASF+EAPPGN KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAANK  AV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
The following BLAST results are available for this feature:
BLAST of CK939284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC3_ARATH9.859e-5893.75Probable cytochrome c At4g10040 OS=Arabidopsis tha... [more]
CYC_CUCMA1.090e-5693.69Cytochrome c OS=Cucurbita maxima PE=1 SV=1[more]
CYC_ORYSJ1.859e-5691.07Cytochrome c OS=Oryza sativa subsp. japonica GN=CC... [more]
CYC_ORYSI1.859e-5691.07Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1... [more]
CYC_PHAAU5.410e-5692.79Cytochrome c OS=Phaseolus aureus PE=1 SV=1[more]
CYC_SAMNI1.574e-5592.79Cytochrome c OS=Sambucus nigra PE=1 SV=1[more]
CYC_ABUTH3.506e-5590.09Cytochrome c OS=Abutilon theophrasti PE=1 SV=1[more]
CYC_ARUMA4.580e-5591.89Cytochrome c OS=Arum maculatum PE=1 SV=1[more]
CYC_BRAOL5.981e-5591.89Cytochrome c OS=Brassica oleracea PE=1 SV=1[more]
CYC_BRANA5.981e-5591.89Cytochrome c OS=Brassica napus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_G05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939284 ID=CK939284; Name=CK939284; organism=Citrus sinensis; type=EST; length=730bp
GGGGAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTC
CACCTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCT
CAGTGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTT
GAATGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATT
CAGCTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTAC
AATTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTT
CCCTGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGA
AGGAGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATG
GGAAGAGTATGGTCCCTGATGATTCAATAATTTTTTGTTTTTGGAAGAAA
AAATGTTGTTCAAATGAGAATGTTCAAAATGTTTTACTCTTTTTAGCCAT
AGACAATTGGATAAAATGTTCTTCCAAAGAAACTTTTCTTTGAGAGGCAT
TTCGCANATTTTGATGATTNNNAAGCGCTATGTATCCTAATTTTGCCACT
TAATTTGTTATAATGGAATTTTAAGTTGCATATTCTTCTTTGAGTGGACT
TTCTTGGATTCAAAGATGTCATTACATTTGGATATGAAATTTAAGTTTTT
TGTGTAAAAAAAAAAAAAAAAAAAAAAAAN
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