EY665998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.883e-38 Identity = 98/228 (42.98%), Postives = 129/228 (56.58%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDL-PEAAGVEVATIDSSQGREADATIISMVRPKPLG 683 D+V +DE AQA+E SC IP+L+ +CILAGD QL P +S KA G+ SL+ER A H + L QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV LR+ L + PE +E+ ++D QGRE +A I++ VR G Sbjct: 369 DVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--------AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKG 585
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.883e-38 Identity = 99/228 (43.42%), Postives = 128/228 (56.14%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDL-PEAAGVEVATIDSSQGREADATIISMVRPKPLG 683 D+V +DE AQA+E SC IP+L+ +CILAGD QL P +S KA G+ SL+ER H LT QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT GC LD + S N GE +V H+ +L+ AGV IAV +PY QV LR+ L + PE +E+ ++D QGRE +A I++ VR G Sbjct: 369 DVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--------AGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKG 585
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.479e-38 Identity = 97/228 (42.54%), Postives = 130/228 (57.02%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDL-PEAAGVEVATIDSSQGREADATIISMVRPKPLG 683 D+V +DE AQA+E SC IP+L+ +CILAGD QL P +S +A G+ SL+ER A H + LT QYRM+ AI WAS+ MY G S +VA HLL D P V T T+ PLLL+DT GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV LR+ L + PE +E+ ++D QGRE +A +++ VR G Sbjct: 369 DVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--------AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKG 585
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 7.156e-38 Identity = 100/227 (44.05%), Postives = 129/227 (56.83%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVRPKPLG 683 D+V IDE AQA+E SC IP+L+ ++CILAGD QL P +S KA G+ +SL+ER A + + LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT GC L+ S N GE +V H+ +L+ AGV IAV SPY QV LR+ L + +E+ ++D QGRE +A I+S VR G Sbjct: 370 DVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT--------AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSL--VHRHPELEIKSVDGFQGREKEAVILSFVRSNRKG 586
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.953e-27 Identity = 87/234 (37.18%), Postives = 124/234 (52.99%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPIL----QGKRCILAGDQCQLAPVILSR--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDPAGT-GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668 D + IDE +QA+EP C IP++ Q + +LAGD QL P I + K + + +L +R + K L QYRMN I + S MY G L++ +TVA+ LL+D P V T T+ PL+ DT+ +E D A GS YNEGE IV H+ +L V ++I V SPY AQV L++ + D + +E++T+D QGRE D I+S+VR Sbjct: 390 DTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ------GDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVR 617
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 7.422e-27 Identity = 79/221 (35.75%), Postives = 117/221 (52.94%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668 D V IDEA+QA+EP C IP+L + ILAGD QL+P + S++ +S+ ER ++ L QYRM++ I+ + S Y L+ + V LL+D V+ T +T P+ DT Y E + S N EA+IV +H+ L+ AG+ IAV +PY AQV +R+ L + + VE+ ++D QGRE +A I S+VR Sbjct: 384 DAVIIDEASQALEPQCWIPLLGMNKVILAGDHMQLSPNVQSKRPY-----ISMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDR--SEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKE--KGIEVEMGSVDKVQGREKEAIIFSLVR 595
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 2.388e-25 Identity = 84/230 (36.52%), Postives = 120/230 (52.17%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP----------YVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668 V IDE+ QA EP CLIP++ G K+ +L GD CQL PVI+ +KA G+ SL ER TL G+ +L QYRM+ A++ + S Y G+L + T+ F P + R + + LG +E + +GT S+ N EA V V + + +GV PS I V +P Y+A+ LR++L +EVA++DS QGRE D I+S VR Sbjct: 653 VLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL--GIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWP----------VPNRPMFFYVQLG-QEEISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVR 863
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae GN=NAM7 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.235e-23 Identity = 85/225 (37.78%), Postives = 114/225 (50.67%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLD-----DLPEAAGVEVATIDSSQGREADATIISMVR 668 V IDE+ QA EP CLIPI++G K+ IL GD QL PVIL RKA + G+ SL ER +L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P++ YG E + GT SF N EA + L GV P I V +PY Q + + + D VEVA++D+ QGRE D I+S VR Sbjct: 569 VLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPMMFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVR 779
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_MOUSE (Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 3.812e-23 Identity = 78/229 (34.06%), Postives = 115/229 (50.22%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG---------VEVATIDSSQGREADATIISMVR 668 + IDE+ QA EP C++P++ G K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+ A++++ S Y GSL + T A + F P P+ T+ +E + +GT S+ N EA V L+ AG P I + +PY Q R L + +G VE+A++D+ QGRE D I+S VR Sbjct: 639 ILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ---------GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ----RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVR 849
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_HUMAN (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 3.812e-23 Identity = 78/229 (34.06%), Postives = 115/229 (50.22%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG---------VEVATIDSSQGREADATIISMVR 668 + IDE+ QA EP C++P++ G K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+ A++++ S Y GSL + T A + F P P+ T+ +E + +GT S+ N EA V L+ AG P I + +PY Q R L + +G VE+A++D+ QGRE D I+S VR Sbjct: 644 ILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ---------GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ----RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVR 854 The following BLAST results are available for this feature:
BLAST of EY665998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY665998 ID=EY665998; Name=EY665998; organism=Citrus sinensis; type=EST; length=901bpback to top |