EY665998

Overview
NameEY665998
Unique NameEY665998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.883e-38
Identity = 98/228 (42.98%), Postives = 129/228 (56.58%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDL-PEAAGVEVATIDSSQGREADATIISMVRPKPLG 683
            D+V +DE AQA+E SC IP+L+  +CILAGD  QL P  +S KA   G+  SL+ER A  H   +   L  QYRM+ AI  WAS+ MY G L +  +VA HLL D P V  T  T  PLLL+DT         GC    L+   + S  N GE  +V  H+ +L+ AGV    IAV +PY  QV  LR+ L +  PE   +E+ ++D  QGRE +A I++ VR    G
Sbjct:  369 DVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--------AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKG 585          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.883e-38
Identity = 99/228 (43.42%), Postives = 128/228 (56.14%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDL-PEAAGVEVATIDSSQGREADATIISMVRPKPLG 683
            D+V +DE AQA+E SC IP+L+  +CILAGD  QL P  +S KA   G+  SL+ER    H       LT QYRM+ AI  WAS+ MY G L +  +VA HLL D P V  T  T  PLLL+DT         GC    LD   + S  N GE  +V  H+ +L+ AGV    IAV +PY  QV  LR+ L +  PE   +E+ ++D  QGRE +A I++ VR    G
Sbjct:  369 DVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--------AGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKG 585          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.479e-38
Identity = 97/228 (42.54%), Postives = 130/228 (57.02%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDL-PEAAGVEVATIDSSQGREADATIISMVRPKPLG 683
            D+V +DE AQA+E SC IP+L+  +CILAGD  QL P  +S +A   G+  SL+ER A  H   +   LT QYRM+ AI  WAS+ MY G   S  +VA HLL D P V  T  T+ PLLL+DT         GC    L+   + S  N GE  +V  H+ +L+ AGV    IAV +PY  QV  LR+ L +  PE   +E+ ++D  QGRE +A +++ VR    G
Sbjct:  369 DVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--------AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKG 585          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 7.156e-38
Identity = 100/227 (44.05%), Postives = 129/227 (56.83%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVRPKPLG 683
            D+V IDE AQA+E SC IP+L+ ++CILAGD  QL P  +S KA   G+ +SL+ER A  +   +   LT QYRM+ AI  WAS  MY G L + S+VA HLL D P V  T  T  PLLL+DT         GC    L+     S  N GE  +V  H+ +L+ AGV    IAV SPY  QV  LR+ L  +     +E+ ++D  QGRE +A I+S VR    G
Sbjct:  370 DVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT--------AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSL--VHRHPELEIKSVDGFQGREKEAVILSFVRSNRKG 586          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.953e-27
Identity = 87/234 (37.18%), Postives = 124/234 (52.99%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPIL----QGKRCILAGDQCQLAPVILSR--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDPAGT-GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668
            D + IDE +QA+EP C IP++    Q  + +LAGD  QL P I +   K +   +  +L +R   +       K L  QYRMN  I  + S  MY G L++ +TVA+ LL+D P V  T       T+ PL+  DT+          +E  D A   GS YNEGE  IV  H+ +L    V  ++I V SPY AQV  L++ + D  +   +E++T+D  QGRE D  I+S+VR
Sbjct:  390 DTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ------GDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVR 617          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.422e-27
Identity = 79/221 (35.75%), Postives = 117/221 (52.94%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668
            D V IDEA+QA+EP C IP+L   + ILAGD  QL+P + S++       +S+ ER       ++   L  QYRM++ I+ + S   Y   L+ +  V   LL+D   V+ T +T  P+   DT   Y        E +      S  N  EA+IV +H+  L+ AG+    IAV +PY AQV  +R+ L +  +   VE+ ++D  QGRE +A I S+VR
Sbjct:  384 DAVIIDEASQALEPQCWIPLLGMNKVILAGDHMQLSPNVQSKRPY-----ISMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDR--SEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKE--KGIEVEMGSVDKVQGREKEAIIFSLVR 595          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.388e-25
Identity = 84/230 (36.52%), Postives = 120/230 (52.17%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP----------YVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668
            V IDE+ QA EP CLIP++ G K+ +L GD CQL PVI+ +KA   G+  SL ER  TL  G+   +L  QYRM+ A++ + S   Y G+L +  T+         F  P          +  R  +  + LG +E +  +GT S+ N  EA  V   V + + +GV PS I V +P          Y+A+   LR++L        +EVA++DS QGRE D  I+S VR
Sbjct:  653 VLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL--GIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWP----------VPNRPMFFYVQLG-QEEISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVR 863          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae GN=NAM7 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.235e-23
Identity = 85/225 (37.78%), Postives = 114/225 (50.67%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLD-----DLPEAAGVEVATIDSSQGREADATIISMVR 668
            V IDE+ QA EP CLIPI++G K+ IL GD  QL PVIL RKA + G+  SL ER  +L  G +  +L  QYRMN  ++ + S   Y GSL +  T+    + ++ F  P  I   P++       YG       E +   GT SF N  EA      +  L   GV P  I V +PY  Q   + + +      D      VEVA++D+ QGRE D  I+S VR
Sbjct:  569 VLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPMMFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVR 779          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_MOUSE (Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.812e-23
Identity = 78/229 (34.06%), Postives = 115/229 (50.22%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG---------VEVATIDSSQGREADATIISMVR 668
            + IDE+ QA EP C++P++ G K+ IL GD CQL PV++ +KA + G+  SL ER   L  G+   +L  QYRM+ A++++ S   Y GSL +  T A  +     F  P      P+    T+          +E +  +GT S+ N  EA  V      L+ AG  P  I + +PY  Q    R  L    + +G         VE+A++D+ QGRE D  I+S VR
Sbjct:  639 ILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ---------GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ----RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVR 849          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_HUMAN (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.812e-23
Identity = 78/229 (34.06%), Postives = 115/229 (50.22%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG---------VEVATIDSSQGREADATIISMVR 668
            + IDE+ QA EP C++P++ G K+ IL GD CQL PV++ +KA + G+  SL ER   L  G+   +L  QYRM+ A++++ S   Y GSL +  T A  +     F  P      P+    T+          +E +  +GT S+ N  EA  V      L+ AG  P  I + +PY  Q    R  L    + +G         VE+A++D+ QGRE D  I+S VR
Sbjct:  644 ILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ---------GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ----RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVR 854          
The following BLAST results are available for this feature:
BLAST of EY665998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SMBP2_RAT1.883e-3842.98DNA-binding protein SMUBP-2 OS=Rattus norvegicus G... [more]
SMBP2_MESAU1.883e-3843.42DNA-binding protein SMUBP-2 OS=Mesocricetus auratu... [more]
SMBP2_MOUSE5.479e-3842.54DNA-binding protein SMUBP-2 OS=Mus musculus GN=Igh... [more]
SMBP2_HUMAN7.156e-3844.05DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGH... [more]
HCS1_YEAST1.953e-2737.18DNA polymerase alpha-associated DNA helicase A OS=... [more]
HCS1_SCHPO7.422e-2735.75DNA polymerase alpha-associated DNA helicase A OS=... [more]
RENT1_ARATH2.388e-2536.52Regulator of nonsense transcripts 1 homolog OS=Ara... [more]
NAM7_YEAST2.235e-2337.78ATP-dependent helicase NAM7 OS=Saccharomyces cerev... [more]
RENT1_MOUSE3.812e-2334.06Regulator of nonsense transcripts 1 OS=Mus musculu... [more]
RENT1_HUMAN3.812e-2334.06Regulator of nonsense transcripts 1 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665998 ID=EY665998; Name=EY665998; organism=Citrus sinensis; type=EST; length=901bp
CCGTTGACCTAGTTGCCATTGATGAAGCAGCACAGGCAATTGAACCTTCT
TGCTTGATCCCAATATTGCAGGGAAAACGCTGTATTCTTGCCGGTGATCA
ATGCCAGCTTGCTCCGGTGATTCTTTCTAGGAAAGCTTTGGAGGGTGGGA
TTGGAGTATCCCTATTGGAGAGAGCTGCAACTTTGCATGAAGGGGTTCTT
GCTACTAAGTTAACAACCCAGTATCGTATGAATGATGCAATTGCAAGCTG
GGCCTCAAAAGAGATGTATGGTGGATCATTAATCTCGTCTTCTACTGTTG
CTAGTCATCTTCTTGTTGATACTCCATTTGTCAAGCCCACATGGATAACA
CAGTGCCCATTGTTGTTGCTTGATACAAGGCTGCCATACGGAAGTTTATC
ACTTGGTTGTGAAGAGCATCTAGATCCAGCTGGCACAGGCTCATTCTACA
ATGAAGGGGAAGCAGAAATTGTTGTGCATCATGTTTTCTCCTTGATTTGT
GCAGGTGTTAGCCCATCAGCAATTGCAGTGCAATCACCTTACGTTGCTCA
GGTACAACCCCTGAGAGAAAGGCTTGATGACCTTCCAGAGGCTGCAGGGG
TTGAGGTAGCAACTATTGATAGCTCTCAAGGCCGGGAGGCTGATGCAACG
ATTATATCAATGGTCCGGCCCAAACCTTTGGGAGCATGCCGGCTCTCCTG
TTGATAGTAACGGCGCTGAATGTTGCCGTGGTCGGCAGACGCACCCCTGC
AGAGAGAGGCGGCCCCCCTTGCCCGCCGCCTCCCACCCACACCCCTCCCC
GCCGGCGTGCCGCCCGGGTGCGCCGGCCACGCGCAGCGGGCCCGCGGCGC
ACCGACGGCACCAGTCTCAGCGAGGTGCGCTCGCCTCACACCCACCGCGC
A
back to top