CK938980

Overview
NameCK938980
Unique NameCK938980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938980_ssr146 microsatellite CK938980_ssr146:146..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2145 contig Csv1_Contig2145:1..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938980 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.869e-18
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  226 NSPLIASPAEDLKAKAA--NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 495
            NSPL       L  K A    C  EGV AG KAA V  V +A+PTL +VR +PWA+ANLN+T QALIIS  + A+YFI  DKT+L  AR+N+
Sbjct:    5 NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNS 96
The following BLAST results are available for this feature:
BLAST of CK938980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN2.869e-1853.26Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004435_F11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938980 ID=CK938980; Name=CK938980; organism=Citrus sinensis; type=EST; length=766bp
GGGAGCGCACACAGANNNGACTGTCATCAAACTATTCAAGATTCAAAAGC
ACATAAAAAGAGATCAAAATCGAAACGAACACTGCAATGCACTGTCCTCC
TCAAATCTTAATCCGCCATCCATTTTTGAGTTTCTTATTCTAATTAAGAA
GAAGAAGAAGAAGAAGAAGAAGGAATGGGATTTCCGTCGGAAGTTAGAGA
TATTTTTGCATCCAGAAGGTCAAATAACTCGCCACTGATTGCCTCTCCTG
CTGAAGATCTAAAGGCTAAGGCCGCCAACGACTGCGTTCAAGAAGGCGTT
CGAGCTGGATTAAAGGCCGCTGCCGTAATGTGTGTTGTCACCGCTGTGCC
GACGTTGGTTGCAGTTCGAAAAATTCCTTGGGCAAAGGCAAACCTGAATT
ATACTGGTCAGGCACTCATCATATCCGCAGTGTCAATTGCTTCTTACTTC
ATCACTGTTGACAAGACTATTTTGGAGTGTGCAAGGAGGAATGCCCAGTA
TGGCAAACCAACTTGAGATTCTGTACCTGAAGCAATCCACCATGAAGATG
CCATGATATGCGTAGTGAGCATAGCACACAGGTTCATATGAGAATATTTA
AATGTATTTGAGACAATTTTTTTCCCCACTTGAGCAACCGATGGAATTCT
CGTGCAATAAGTTTACCATTTTATCTTTGGCTGATATCTCTATACTAACT
TATCCTTATTGATATGATTATGAGAAATTAGCGAGCAGTCTGCCAAAAAA
AAAAAAAAAAAAAAAA
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