CK938966

Overview
NameCK938966
Unique NameCK938966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938966_ssr314 microsatellite CK938966_ssr314:314..323. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938966_ssr83 microsatellite CK938966_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.377e-80
Identity = 143/206 (69.42%), Postives = 160/206 (77.67%), Query Frame = 3
Query:  129 MNRHHDPNPFDEEE--VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            MNRHHDPNPFDE+E  VNPFS G        +VP+  S P+ +GQ   ATVDIPLDNMN+  +K+R+LA WEA+L            AI K GV  DD+NWPPFFPIIHHDI+KEIP+HAQ+LQYLAFASW GIVLCLVFNVIA +VCWIKGGGVKIFFLATIYAL+G P+SYVLWYRPLYRAMRTDSALKF WFF  Y IHI  C
Sbjct:    1 MNRHHDPNPFDEDEEIVNPFSKGGG------RVPAA-SRPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFC 199          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.366e-69
Identity = 129/207 (62.32%), Postives = 146/207 (70.53%), Query Frame = 3
Query:  138 HHDPNPFDEEEV--NPFSNGPAAPA---SRSQVPSVTSEPIGFGQKYG-ATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            HHDPNPFDE     NPFSNG        SR Q     +EP GFG   G ATVD+PLD M + K K REL+SWE DL            A+  AGVP +D+NWPPFFPIIHHDI+ EIP + Q+LQYLAFASW GIVLCL +N IAVIVCWIK G  K+FFLATIYALLG+P+SY++WYRPLYRAMRT+SA  F WFFL Y IHI  C
Sbjct:    2 HHDPNPFDEGNADDNPFSNGGGGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMGDSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFC 208          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.075e-67
Identity = 128/216 (59.26%), Postives = 149/216 (68.98%), Query Frame = 3
Query:  138 HHDPNPFDE-EEVNPFSNGPAAPASR--------------SQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            HHDPNPFDE  + NPFSNG    A R              SQ  S     +G G K GATVDIPLDNM++ K K +EL  WEADL            A+  AGVP +++NWPPFFPIIHHDI+ EIP +AQ+LQYLAFASW GIVLCL +N IAVIVCWI+GG  K+FFLATIY +LG+P+SY++WYRPLYRAMRTDSA  F WFFL Y +HI  C
Sbjct:    2 HHDPNPFDEGADDNPFSNGGGGGARRGGGGGGGGGGGGGKSQF-SFGFGGLGGGSKGGATVDIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHDIANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIRGGDSKLFFLATIYGMLGMPLSYLMWYRPLYRAMRTDSAFSFGWFFLCYMLHIAFC 216          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.213e-64
Identity = 117/204 (57.35%), Postives = 143/204 (70.10%), Query Frame = 3
Query:  129 MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            M   +D NPFDE++VNPF+ G   PAS S++P +  EP GF    GATVDIPLD+  + KKKE+EL + EA+L            A  +AG+  +++NWPPFFPIIHHDIS EIPIH QR+QYLAF+S  G+  CL +N+IA    WIKG GV I+ LA IY + GVP +YVLWYRPLY AMRT+SALKF WFFLFY IHI  C
Sbjct:    1 MAGRYDRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFC 203          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.169e-62
Identity = 113/205 (55.12%), Postives = 143/205 (69.76%), Query Frame = 3
Query:  129 MNRHHDPNPFDEEEVNPFSNG-PAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            M   +DPNPFDEE+VNPFSN   AA A+ S+   +  +   +   +G TVDIPLD   + KKKER+L + EA+L            AI +AG+  +++NWPPFFPIIHHDI+ EIPIH + LQY+AF S  G+VLCL +NV++V   WIKG GVKI+FLA IY + GVP +Y LWYRPLYRA RTDSA+KF WFF+FY +HI  C
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPRSAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFC 205          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.464e-61
Identity = 116/208 (55.77%), Postives = 143/208 (68.75%), Query Frame = 3
Query:  129 MNRHHDPNPF-DEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMN--EPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            M   +DPNPF +EEEVNPF+N    P AS S++  +  EP+GF   YG TVDIPLD     + KKKE+EL + EA+L            A  +AG+  + +NWPPFFP+IHHDI+ EIP+H QRLQY+ FA++ G+VLCL +N+IAV   WIKG GV I+ LA IY + GVP  YVLWYRPLYRA RTDSAL F WFFLFY +HI  C
Sbjct:    1 MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFD--YGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFC 206          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.192e-58
Identity = 106/200 (53.00%), Postives = 138/200 (69.00%), Query Frame = 3
Query:  141 HDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            H  N F++++VNPF+ G   PA+ S++P ++ EP  F       VDIPLD+  + KKKE+EL + EA+L            A  +AG+  +D+NWPPFFP+IHH+IS EIPIH QR+QYLAF+S+ G+  CL +N+IA    W+KG GV I+ LA IY + GVP +YVLWYRPLY AMRT+SALKF WFFLFY IHI  C
Sbjct:    5 HGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADF-----YNVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFC 199          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.540e-57
Identity = 104/200 (52.00%), Postives = 137/200 (68.50%), Query Frame = 3
Query:  141 HDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            +  + FD+ E+NPF+N  + PA+ S++  +  EP       GAT+DIPLD+  + K KE+EL   EA+L            AI +AG+  +++NWPPFFP+IHHDIS EIPIH QR+QY+AF S  G+V+CL++N++AV   WIKG G  I+FLA IY + GVP +YV+WYRPLYRAMRTDSALKF WFF  Y  HI  C
Sbjct:    4 YQSHSFDDGEINPFANPTSVPAATSKLSPLPPEPYD----RGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFC 199          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.588e-55
Identity = 111/210 (52.86%), Postives = 138/210 (65.71%), Query Frame = 3
Query:  129 MNRHHDPNPFDEE-EVNPFSNGPAAPA-SRSQVPSVTSEPIGFGQKYGATVDIPLDN----MNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            M   +D N FDE+ EVNPF+N  + PA S S++  +  EP GFG  YG TVDIPLD       + KKKE+EL + EADL            A  +AG+  + +NWP FFP+IHHDI+ EI +  QRLQY+AFA++ G+VL L +N+IAV   WIKG GV I+ LA IY + GVP  YVLWYRPLYRA R+DSA  F WFFLFY +HI  C
Sbjct:    1 MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFG--YGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFC 208          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.781e-54
Identity = 106/201 (52.74%), Postives = 134/201 (66.67%), Query Frame = 3
Query:  141 HDPNPFDEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            HDPNPF +EE+NPF+N  + P AS S +  +  EP       GATVDIPLD+ N+ + KE EL + E +L            AI + GV  +++NWP FFP+IHHDI  EIPIH Q++QY+AF +  G+V CL++N++AV V WIKG G  I+ L+ IY L GVP +YVLWYRPLYRA RTDSALKF  FF FY  HI  C
Sbjct:    4 HDPNPFADEEINPFANHTSVPPASNSYLKPLPPEPYD----RGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFC 200          
The following BLAST results are available for this feature:
BLAST of CK938966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SCAM4_ARATH9.377e-8069.42Secretory carrier-associated membrane protein 4 OS... [more]
SCAM6_ORYSJ4.366e-6962.32Secretory carrier-associated membrane protein 6 OS... [more]
SCAM5_ORYSJ1.075e-6759.26Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ORYSJ7.213e-6457.35Secretory carrier-associated membrane protein 2 OS... [more]
SCAM_PEA5.169e-6255.12Secretory carrier-associated membrane protein OS=P... [more]
SCAM3_ARATH7.464e-6155.77Secretory carrier-associated membrane protein 3 OS... [more]
SCAM3_ORYSJ1.192e-5853.00Secretory carrier-associated membrane protein 3 OS... [more]
SCAM1_ARATH8.540e-5752.00Secretory carrier-associated membrane protein 1 OS... [more]
SCAM5_ARATH3.588e-5552.86Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ARATH1.781e-5452.74Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_A08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938966 ID=CK938966; Name=CK938966; organism=Citrus sinensis; type=EST; length=741bp
GGGGACAGCACCGCACGGCACCAGCAGCAACTAATAGCAGTGTTAGTGAA
TTTGCGAAGTTAGGTGCAAAATTTAGGGATCTGAAAGAAAGAAAAAAACC
AAAAAAAAAGAAGAAAAAACACGAATCAATGAATCGCCACCACGACCCAA
ATCCCTTCGATGAAGAAGAGGTCAATCCATTTTCGAATGGCCCGGCTGCT
CCTGCATCAAGGTCACAGGTTCCTTCTGTGACATCTGAACCTATTGGATT
TGGACAGAAATATGGGGCGACAGTTGATATTCCACTAGATAATATGAACG
AGCCTAAGAAAAAAGAGAGAGAGCTTGCATCATGGGAAGCAGATCTTAAA
AGGAGGGAAAAGGAAATAAAACGAAGAGAAGAGGCTATTGTCAAAGCTGG
CGTTCCCACAGACGATAGAAATTGGCCACCTTTTTTTCCAATTATTCATC
ATGACATATCGAAGGAGATACCAATTCATGCTCAAAGGCTGCAGTATCTT
GCTTTTGCTAGTTGGTTTGGTATAGTTCTCTGTCTTGTATTCAATGTAAT
TGCCGTGATTGTCTGTTGGATTAAAGGCGGTGGTGTCAAAATCTTTTTCC
TTGCAACAATTTATGCTTTGCTTGGAGTGCCTATGTCATATGTTCTATGG
TACAGGCCTCTTTATCGAGCAATGAGGACGGATAGTGCATTGAAGTTCAG
CTGGTTTTTCCTGTTCTACTGGATCCACATCGNNNTTTGTA
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