CK938964

Overview
NameCK938964
Unique NameCK938964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938964 vs. ExPASy Swiss-Prot
Match: Y1615_ARATH (Uncharacterized basic helix-loop-helix protein At1g06150 OS=Arabidopsis thaliana GN=At1g06150 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.117e-45
Identity = 97/193 (50.26%), Postives = 127/193 (65.80%), Query Frame = 2
Query:   77 MKLSNANKRRTKPGDNQKPRPRDRQLIQDRIKELRELVPNGVKCSIDCLLGRTIEHMLYLRSVTDQAEKLHQWVHREVAARKDLRSSETN----DGKQNGTTWAFEVGNELLACPIVVEDLSYPGHMKIEMLCNEQSLFLEIAQVIRSLELTILKGVMENRCNNTWAHFIVE--TSKGFHRTEIFWPLMHLLQ 637
            +++   NK+R KPG++ +PRPRDRQLIQDRIKELRELVPNG KCSID LL  TI+HML+L+SV+  A+KL +      +A   ++  +T        + G++WA E+G  L  C I+VE+L   G M IEMLC E S FLEIA VIRSLEL IL+G  E +   TW  F+VE   +K  HR +I W L+ + Q
Sbjct:  542 LEIPKKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLECTIKHMLFLQSVSQHADKLTK------SASSKMQHKDTGTLGISSTEQGSSWAVEIGGHLQVCSIMVENLDKEGVMLIEMLCEECSHFLEIANVIRSLELIILRGTTEKQGEKTWICFVVEGQNNKVMHRMDILWSLVQIFQ 728          
BLAST of CK938964 vs. ExPASy Swiss-Prot
Match: Y1462_ARATH (Uncharacterized basic helix-loop-helix protein At1g64625 OS=Arabidopsis thaliana GN=At1g64625 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.771e-42
Identity = 86/180 (47.78%), Postives = 118/180 (65.56%), Query Frame = 2
Query:   98 KRRTKPGDNQKPRPRDRQLIQDRIKELRELVPNGVKCSIDCLLGRTIEHMLYLRSVTDQAEKLHQWVHREVAARKDLRSSETNDGKQNGTTWAFEVGNELLACPIVVEDLSYPGHMKIEMLCNEQSLFLEIAQVIRSLELTILKGVMENRCNNTWAHFIVETSKGFHRTEIFWPLMHLLQ 637
            K+R K G++++PRP+DRQ+IQDRIKELR ++PNG KCSID LL  TI+HM++++S+   AE+L Q    ++   K+              TWA EVG E + CPI+VE+L+  G M+IEM+C E+  FLEI QV+R L L ILKGVME R    WAHFIV+      R ++ + L+ L Q
Sbjct:  351 KKRAKAGESRRPRPKDRQMIQDRIKELRGMIPNGAKCSIDTLLDLTIKHMVFMQSLAKYAERLKQPYESKLVKEKE-------------RTWALEVGEEGVVCPIMVEELNREGEMQIEMVCEEREEFLEIGQVVRGLGLKILKGVMETRKGQIWAHFIVQAKPQVTRIQVLYSLVQLFQ 517          
The following BLAST results are available for this feature:
BLAST of CK938964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1615_ARATH8.117e-4550.26Uncharacterized basic helix-loop-helix protein At1... [more]
Y1462_ARATH3.771e-4247.78Uncharacterized basic helix-loop-helix protein At1... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_A06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938964 ID=CK938964; Name=CK938964; organism=Citrus sinensis; type=EST; length=919bp
GGGGAATGCAATGGGAACATTTATTGACACAGAGCTGTTTGGAAAAGAGC
ACAACAGCCTGCAGCCTAGGAAGGGAATGAAGCTGTCTAATGCAAACAAA
AGGAGAACTAAACCTGGTGATAACCAAAAACCAAGACCGAGGGATAGGCA
ATTGATCCAGGACCGGATTAAGGAATTGCGTGAACTTGTTCCAAATGGTG
TGAAGTGCAGCATAGATTGCCTCTTAGGTCGAACCATTGAGCACATGCTG
TACTTAAGAAGTGTAACCGATCAGGCTGAGAAGTTGCACCAGTGGGTGCA
CCGTGAGGTAGCTGCCCGTAAGGATTTAAGATCATCTGAAACCAACGACG
GTAAACAAAACGGCACCACTTGGGCTTTTGAAGTTGGAAATGAGCTCCTT
GCCTGTCCCATAGTTGTTGAAGATCTTTCATACCCGGGACACATGAAGAT
CGAGATGTTATGCAACGAGCAGAGTCTATTCCTTGAGATTGCACAGGTCA
TAAGGAGCTTAGAGTTAACCATCCTGAAAGGTGTCATGGAAAACCGCTGT
AATAATACATGGGCTCATTTCATCGTTGAGACTTCCAAAGGCTTTCACAG
AACGGAGATTTTCTGGCCTCTTATGCACCTGTTGCAGCGCAAAAGAAAGC
CCATTTCAAGCAAGATTTGAAAATGCCAACATTCATAGAAGGCCATCCAG
AGACAATTCAAGAACAATTCCAATATGTTAAGACAACTTATCATTAGTGA
ACAGTGGAATGAGAAACCTATCATCTTTTGTATCAGTACAACGATTTGTT
TTGTGTACAGACTGGTGAAAGTTTTGATTGGTGTACTGTACTGTTGATTA
AGAACTATTTCTAAGCAAATAGAGACAGGCTCGCTTCCCCAAAAAAANNN
NNAAAAAAAAAAAAAAAAA
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