CK938959

Overview
NameCK938959
Unique NameCK938959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CITSI (30S ribosomal protein S12, chloroplastic OS=Citrus sinensis GN=rps12-A PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.515e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_VITVI (30S ribosomal protein S12, chloroplastic OS=Vitis vinifera GN=rps12-A PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_TOBAC (30S ribosomal protein S12, chloroplastic OS=Nicotiana tabacum GN=rps12-A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_SPIOL (30S ribosomal protein S12, chloroplastic OS=Spinacia oleracea GN=rps12-A PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_SOLTU (30S ribosomal protein S12, chloroplastic OS=Solanum tuberosum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_SOLLC (30S ribosomal protein S12, chloroplastic OS=Solanum lycopersicum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_SOLBU (30S ribosomal protein S12, chloroplastic OS=Solanum bulbocastanum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PIPCE (30S ribosomal protein S12, chloroplastic OS=Piper cenocladum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PHAAO (30S ribosomal protein S12, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNARQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PANGI (30S ribosomal protein S12, chloroplastic OS=Panax ginseng GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RR12_CITSI3.515e-16100.0030S ribosomal protein S12, chloroplastic OS=Citrus... [more]
RR12_VITVI2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Vitis ... [more]
RR12_TOBAC2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Nicoti... [more]
RR12_SPIOL2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Spinac... [more]
RR12_SOLTU2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Solanu... [more]
RR12_SOLLC2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Solanu... [more]
RR12_SOLBU2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Solanu... [more]
RR12_PIPCE2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Piper ... [more]
RR12_PHAAO2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Phalae... [more]
RR12_PANGI2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Panax ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bp
GGGGTTTAATATTCTATTAAACAGAAGAAATTCATAATCATCCGGTTAGG
ATCGATCTAAACCAGCCCATAATGGATAATTCAGCATGCCAACTATTAAA
CAACTTATTAGAAACCCAAGACAGCCAATTAGAAACGTTACCAAATCCCC
CGCTCTGCGGGGATGTCCTCAGCGCCGAGGAACATGTACAAGGGTGTATG
TGCGACTCGTTTCAATCATGGGCTGAGACAAACCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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