CK938952

Overview
NameCK938952
Unique NameCK938952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938952_ssr13 microsatellite CK938952_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2579 contig Csv1_Contig2579:404..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.494e-24
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   91 MSDTCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 288
            MSDTCGNCDCADK+QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.519e-19
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  100 TCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 291
            TCGNCDC DKSQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.385e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   91 MSDTCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.217e-17
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   91 MSDTCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 285
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.217e-17
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   91 MSDTCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 288
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   91 MSDTCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 288
            MSD CGNCDCADKSQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   91 MSDTCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 288
            MSD CGNCDCADKSQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.278e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   91 MSDTCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 288
            MSD CGNCDCADKSQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK938952 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   91 MSDTCGNCDCADKSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 288
            MSD CG+CDCADKSQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK938952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA3.494e-2471.21Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.519e-1962.50Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.385e-1967.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV9.217e-1758.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO9.217e-1759.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.053e-1656.06Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.053e-1656.06Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ3.278e-1451.52Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.246e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_B03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938952 ID=CK938952; Name=CK938952; organism=Citrus sinensis; type=EST; length=405bp
GGGGATCATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTC
TATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGGACA
CCTGCGGCAACTGCGACTGCGCTGACAAGAGCCAGTGTGTGAAGAAGGGA
AGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCAC
CGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCAAGT
GCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAA
GCAAACACATGCAGCAAAAAATAAGAAGCTGCAGGTGTGCCTAAATATTG
TGGGGGTTAAGAATAATGTAAGGGTGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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