CK938951

Overview
NameCK938951
Unique NameCK938951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938951 vs. ExPASy Swiss-Prot
Match: KATAM_ORYSJ (Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.938e-49
Identity = 88/176 (50.00%), Postives = 125/176 (71.02%), Query Frame = 3
Query:    6 LIDCNYGATNCDNPVNVMNMFQNSVFCLQPPGDSYTKKSVFDTILAGCIPVFFHPGTAYAQYLWHLPKNYSSYSLYIPVRDVKDWKVNVNETLVGISEDRILALREQVVRLIPSVIYADPRSKLETLEDAFDLPVKGILERIEQVRSSIRHERDPGVGXADGDDYKYTFAPYGKES 533
            L++C+ G + C +P  +MNMFQNS+FCLQP GDSYT++S FD++LAGCIPVFFHPG+AY QY WHLPKNY+ YS++IP   V+   V++ + L  I  D +  +RE+V+ LIP VIYADPRSKLETL+DAFD+ V+ I+ ++ Q+R  I  + +      + + +KY     G+ +
Sbjct:  374 LLECDLGESKCHSPSAIMNMFQNSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYVQYTWHLPKNYTRYSVFIPEDGVRKGNVSIEDRLKSIHPDMVKKMREEVISLIPRVIYADPRSKLETLKDAFDVSVEAIINKVTQLRRDIIEDHE-DKDFVEENSWKYDLLEEGQRT 548          
BLAST of CK938951 vs. ExPASy Swiss-Prot
Match: KATAM_ARATH (Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.161e-47
Identity = 81/174 (46.55%), Postives = 126/174 (72.41%), Query Frame = 3
Query:    6 LIDCNYGATNCDNPVNVMNMFQNSVFCLQPPGDSYTKKSVFDTILAGCIPVFFHPGTAYAQYLWHLPKNYSSYSLYIPVRDVKDWKVNVNETLVGISEDRILALREQVVRLIPSVIYADPRSKLETLEDAFDLPVKGILERIEQVRSSIRHERDPGVGXADGDDYKYTFAPYGK 527
            L++C++G + C  P ++M MFQ+S+FCLQP GDSYT++S FD++LAGCIPVFFHPG+AY QY WHLPKNY++YS++IP  DV+   +++ E L+ I   ++  +RE V+ LIP +IYADPRS+LET +DAFD+ V+ +++++ ++R ++   R       + + +KY     G+
Sbjct:  397 LLECDFGESKCHAPSSIMQMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKNYTTYSVFIPEDDVRKRNISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRLRKNMIEGRTEYDYFVEENSWKYALLEEGQ 570          
The following BLAST results are available for this feature:
BLAST of CK938951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KATAM_ORYSJ3.938e-4950.00Xyloglucan galactosyltransferase KATAMARI1 homolog... [more]
KATAM_ARATH2.161e-4746.55Xyloglucan galactosyltransferase KATAMARI1 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_B01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938951 ID=CK938951; Name=CK938951; organism=Citrus sinensis; type=EST; length=567bp
GGGGATTGATAGATTGTAATTATGGTGCTACTAATTGCGATAACCCGGTT
AACGTGATGAATATGTTTCAAAACTCTGTGTTTTGTTTGCAGCCTCCAGG
GGATTCATACACTAAAAAATCAGTTTTTGACACCATTTTGGCTGGCTGCA
TTCCGGTTTTTTTCCATCCAGGTACTGCTTATGCACAATATTTGTGGCAT
TTACCCAAGAATTATAGTTCATATTCTTTGTATATACCAGTGAGAGATGT
TAAAGATTGGAAAGTTAATGTCAATGAGACATTAGTTGGAATTTCAGAAG
ATAGGATATTGGCTTTAAGAGAACAAGTTGTAAGGCTGATTCCAAGTGTA
ATTTATGCTGATCCAAGGTCTAAATTGGAGACCTTGGAAGATGCATTTGA
TTTACCTGTTAAAGGAATTCTTGAGAGAATTGAACAAGTTAGGAGTTCAA
TCAGACACGAAAGGGATCCTGGTGTTGGNNNTGCAGATGGAGATGATTAC
AAATACACATTTGCTCCATATGGTAAAGAAAGCTGATATTAGAACTTTTG
ATTCGTTACTATTTAAC
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