CK938940

Overview
NameCK938940
Unique NameCK938940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK938940 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 3 
Query:  414 MKEVLRSSVGVMGESRLGLTDKVVLLKGDLFAVKRFRKLRVRRSEFGKRVERLAHFSTLCEYLVPITAYLYAKRIKFVLCDYYPMXXXXXXXXXXXXXXHTALNWKQRLKILLDIAQAISFIHTECPP 797
            ++++LR+S  V+G+   G   K VL +     VKR +++   + EF +++E ++        +VP+ AY Y+K  K ++CDYYP                T L+W  R+KI L  A+ I+ +H    P
Sbjct:  353 LEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVAAGKREFEQQMEIISRVGNHPS-VVPLRAYYYSKDEKLMVCDYYPAGNLSSLLHGNRGSEKTPLDWDSRVKITLSAAKGIAHLHAAGGP 479
[Close]
BLAST of CK938940 vs. ExPASy Swiss-Prot
Match: Y3868_ARATH (Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 46/171 (26.90%), Postives = 81/171 (47.37%), Query Frame = 3 
Query:  273 KSRKSIKEGEQSKSGSIQDYEDCLVGFYGDLPLISCGSGTNRGVRMTMKEVLRSSVGVMGESRLGLTDKVVLLKGDLFAVKRFRKLRVRRSEFGKRVERLAHFSTLCEYLVPITAYLYAKRIKFVLCDYYPMXXXXXXXXXXXXXXHTALNWKQRLKILLDIAQAISFIHT 785
            K  +S  + E+  SG  +  ++ LV F G                  ++++LR+S  V+G+   G T K +L +G    VKR +++   + EF +++E +   S     + P+ AY ++K  K ++ DYY                  AL+W+ RL+I L+ A+ IS IH+
Sbjct:  301 KPGRSDNKAEEFGSGVQEAEKNKLVFFEGS------------SYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEVAAGKREFEQQMEAVGRISPHVN-VAPLRAYYFSKDEKLLVYDYYQGGNFSMLLHGNNEGGRAALDWETRLRICLEAARGISHIHS 458
The following BLAST results are available for this feature:
BLAST of CK938940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5830_ARATH3.622e-1129.69Probable inactive receptor kinase At5g58300 OS=Ara... [more]
Y3868_ARATH8.070e-1126.90Probable inactive receptor kinase At3g08680 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_B12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938940 ID=CK938940; Name=CK938940; organism=Citrus sinensis; type=EST; length=801bp
GGGGGTCCTCCAAGCTGTTCTCATATACTTTTTGTATCTCATCGAATCCA
TAAGAATCCAAAACGAAATACCACCTCCACCCTACCCTGGGTTCGATATC
TCCCATGAAAATAAACGTCAAGCCAATCATAAGAATCCAGACTCTCCATC
AAAATGATCACAAGACCGACTAATTGTTCAGAATTTCACAAAAATAATTG
AACATTATTCTCGAGACAAACACCACCTCCACCTCCACCTAAATAGTAAA
AATGCTGTCGAGAGCCTACACAAAAAGTAGAAAGAGCATTAAAGAAGGAG
AACAGAGCAAATCAGGGTCAATCCAGGACTACGAGGACTGCCTGGTTGGG
TTCTATGGTGATCTACCGTTGATCTCTTGTGGGAGTGGGACTAACCGTGG
GGTCCGCATGACAATGAAGGAGGTTTTGAGATCATCTGTCGGAGTCATGG
GAGAGAGTCGTTTGGGGTTAACGGACAAGGTTGTGTTGTTAAAAGGTGAC
TTGTTTGCCGTGAAAAGGTTTCGAAAATTGAGGGTCAGGAGAAGCGAGTT
TGGCAAAAGAGTTGAGAGATTGGCGCATTTTAGCACACTGTGTGAGTATC
TCGTGCCTATCACTGCTTATTTGTATGCCAAGAGGATCAAGTTTGTTCTT
TGTGATTATTATCCTATGGGAAGCCTCGCTGACCTACTTGCCGGTGGAAG
AAGGCTCGGTCACACTGCCTTGAATTGGAAACAACGGCTGAAGATATTAC
TTGACATCGCCCAAGCCATTTCCTTCATCCACACAGAATGTCCTCCAAAT
G
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