CK938939

Overview
NameCK938939
Unique NameCK938939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2253 contig Csv1_Contig2253:46..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938939 vs. ExPASy Swiss-Prot
Match: FTRC_SOYBN (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.349e-59
Identity = 111/148 (75.00%), Postives = 123/148 (83.11%), Query Frame = 2
Query:   26 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 469
            MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECHCMLFLTP+NDFAG +Q+I+LDEIKESTANM
Sbjct:    1 MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTANM 144          
BLAST of CK938939 vs. ExPASy Swiss-Prot
Match: FTRC2_SPIOL (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.721e-57
Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = 2
Query:  104 RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 469
            RP   I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPLCPCR+YDDKAAEA QGFWNCPCVPMRERKECHCMLFLTPENDFAG+DQ+I LDEI+E TANM
Sbjct:   27 RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPLCPCRYYDDKAAEATQGFWNCPCVPMRERKECHCMLFLTPENDFAGKDQTIGLDEIREVTANM 148          
BLAST of CK938939 vs. ExPASy Swiss-Prot
Match: FTRC1_SPIOL (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea GN=FTRC PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.485e-56
Identity = 98/126 (77.78%), Postives = 118/126 (93.65%), Query Frame = 2
Query:   95 ARPRPVTQ-IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTANM 469
            A PR  ++ IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+LGAPLCPCRHYDDK AEA+QGFWNCPCVPMRERKECHCMLFLTP+NDFAG++Q+I+LDEI+E T+NM
Sbjct:   19 ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTLGAPLCPCRHYDDKEAEAKQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKEQTITLDEIREVTSNM 144          
BLAST of CK938939 vs. ExPASy Swiss-Prot
Match: FTRC_MAIZE (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays GN=FTRC PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.843e-52
Identity = 96/126 (76.19%), Postives = 110/126 (87.30%), Query Frame = 2
Query:   98 RPRPVTQIRAQVE----PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTA 463
            RPR    +RAQ       ++KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+D+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECHCMLFLTP+NDFAG+DQ IS +EIKE+T+
Sbjct:   26 RPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHRDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQVISFEEIKEATS 150          
BLAST of CK938939 vs. ExPASy Swiss-Prot
Match: FTRC_PORYE (Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra yezoensis GN=ftrB PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.879e-38
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  146 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKE 454
            +++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE    +WNCPCVPMRER+ECHCMLFLTP+N+FA   Q I    + E
Sbjct:   11 ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEISATYWNCPCVPMRERRECHCMLFLTPDNEFASDLQEIDKTTLTE 113          
BLAST of CK938939 vs. ExPASy Swiss-Prot
Match: FTRC_PORPU (Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra purpurea GN=ftrB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37
Identity = 69/106 (65.09%), Postives = 81/106 (76.42%), Query Frame = 2
Query:  149 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKESTAN 466
            ++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE    +WNCPCVPMRERKECHCMLFLTP+N+F    Q I    + E  A+
Sbjct:   12 NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISATYWNCPCVPMRERKECHCMLFLTPDNEFTSDLQEIDKTTLLEKIAS 117          
BLAST of CK938939 vs. ExPASy Swiss-Prot
Match: FTRC_CYACA (Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium caldarium GN=ftrB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.856e-36
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = 2
Query:  146 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSISLDEIKE 454
            K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD  GAPLCPCRHY++K  E    +WNCPCVPMRERKECHCMLFL P N+F+G+ Q IS D++++
Sbjct:    6 KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVLAAYWNCPCVPMRERKECHCMLFLQPSNEFSGESQLISKDDLQK 108          
BLAST of CK938939 vs. ExPASy Swiss-Prot
Match: FTRC_GUITH (Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia theta GN=ftrB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.872e-36
Identity = 63/101 (62.38%), Postives = 79/101 (78.22%), Query Frame = 2
Query:  131 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQSI 433
            +E    S   M+KF+E YA+R++TFFC D S+T +V++GLA HKD  GAPLCPCRHYDDK+ E    +WNCPCVPMRERKECHCMLFLT +N+FAG  Q++
Sbjct:    2 IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDKSEEVASTYWNCPCVPMRERKECHCMLFLTKDNEFAGSSQTL 102          
The following BLAST results are available for this feature:
BLAST of CK938939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FTRC_SOYBN5.349e-5975.00Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC2_SPIOL1.721e-5784.43Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC1_SPIOL2.485e-5677.78Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC_MAIZE2.843e-5276.19Ferredoxin-thioredoxin reductase catalytic chain, ... [more]
FTRC_PORYE8.879e-3866.02Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_PORPU1.514e-3765.09Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_CYACA2.856e-3660.19Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_GUITH4.872e-3662.38Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_D10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938939 ID=CK938939; Name=CK938939; organism=Citrus sinensis; type=EST; length=740bp
GGGATAAGCAATCATCCATTCAAACATGACTCTTCAATCCTCTTTGTGCG
GCTCCGGCGTTTCGACTTTCATCTGCACACCCCGTCCCATAATTGCCCGT
CCTCGCCCGGTGACTCAAATTCGTGCCCAAGTGGAGCCATCGGAGAAGTC
AGTTGAGATAATGAGGAAATTCTCAGAGCAATATGCTAGAAGATCTGACA
CTTTCTTTTGTGTTGACAAAAGTGTCACTTCTGTTGTTATTAAGGGATTG
GCAGATCATAAAGATTCATTGGGTGCACCTCTTTGTCCATGTAGGCATTA
TGACGACAAAGCTGCTGAAGCTCAGCAGGGCTTCTGGAATTGTCCATGTG
TTCCCATGAGAGAGAGGAAGGAATGCCACTGCATGCTCTTTCTCACTCCA
GAGAACGATTTTGCTGGCCAGGATCAGTCCATCTCCTTGGATGAAATCAA
GGAATCAACAGCAAATATGTGATGTAACTGACTATAATAGGCAAGTTTTA
CTTGTTTAATCAGTGATCTTTTGTATTTGGCCAAAAAGAAGAGAAGAGTT
ATAATGAAGATCATCTCCTGCGATGATGAACTCATAACATAGCAGCGACA
GTGAAGATGTAGAGCTTAGTGTTGAGCATATTGTTATCTTGTAGTTGGCC
CAAAAAAGATAACCAACACTGAATCATTTGATGTATATTATTTGTATGCC
AATTGGCAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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