CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938935_ssr104 microsatellite CK938935_ssr104:104..113. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: ALTA7_ALTAL (Minor allergen Alt a 7 OS=Alternaria alternata GN=ALTA7 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.339e-21
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY-TFGSGMFEMNEVKGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKK 571
            AG+F STG  GGGQE TA+T+++ L  HG ++VPLGY T  S +  ++EV GGS +GAGTF+A DGSRQP++LEL  A  QGK   E   K
Sbjct:  111 AGVFVSTGTLGGGQETTAITSMSTLVDHGFIYVPLGYKTAFSMLANLDEVHGGSPWGAGTFSAGDGSRQPSELELNIAQAQGKAFYEAVAK 201          

HSP 2 Score: 33.4982 bits (75), Expect = 2.339e-21
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = 3
Query:  219 VPETLSSVILQKMKAPPKTNDVPVIR-PHLLESSGVLVF 332
            V ETL   +L KM APPK + VPV+  P +LE    ++F
Sbjct:   39 VAETLPQEVLDKMYAPPKDSSVPVLEDPAVLEEFDGILF 77          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: CLAH7_CLAHE (Minor allergen Cla h 7 OS=Cladosporium herbarum GN=CLAH7 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.607e-19
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY-TFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            AG+F STG  GGGQE TAL A++ L+HHG+++VPLGY T    + + +EV+G + +GAGTF+  DGSRQP+  EL+    QGK   E   K+
Sbjct:  111 AGLFISTGTQGGGQESTALAAMSTLSHHGIIYVPLGYKTTFHLLGDNSEVRGAAVWGAGTFSGGDGSRQPSQKELELT-AQGKAFYEAVAKV 201          

HSP 2 Score: 34.6538 bits (78), Expect = 7.607e-19
Identity = 17/32 (53.12%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  219 VPETLSSVILQKMKAPPKTNDVPVIR-PHLLE 311
            VPETL+  +L KM APPK + +P I  P +LE
Sbjct:   39 VPETLTQEVLTKMHAPPKDDSIPEITDPFILE 70          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: P25_SCHPO (P25 protein OS=Schizosaccharomyces pombe GN=obr1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.674e-18
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY--TFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGK 547
            G F+STG  GGGQE TALTA+T   HHGM+FVPLGY  TF S M  +  + GGSS+GAG++A ADGSR  +D EL+ A  QG+
Sbjct:  112 GQFFSTGTLGGGQESTALTAMTSFVHHGMIFVPLGYKNTF-SLMANVESIHGGSSWGAGSYAGADGSRNVSDDELEIARIQGE 193          

HSP 2 Score: 29.6462 bits (65), Expect = 1.674e-18
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 3
Query:  222 PETLSSVILQKMKAPPKTNDVPVIRPHLLESSGVLVF 332
            PETLS  IL+KM A PK N  PV+   +L      +F
Sbjct:   42 PETLSPEILEKMHAAPKPN-YPVVTLDVLTQYDAFLF 77          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALTI (Flavoprotein wrbA OS=Salmonella typhi GN=wrbA PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  308 GIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            G+F STG  GGGQE T  +  T LAHHGM+ VP+GY+    +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  109 GVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYS-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_PARL1 (Flavoprotein wrbA OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            +F STG  GGG E T  +  T L HHGM+ V L Y+ G+ +F+++EV+GGS YGA T A  DG RQPT+ EL  A  QG +VA IA KLK
Sbjct:  114 VFTSTGT-GGGNETTITSFHTNLFHHGMVVVGLPYSVGTELFDISEVRGGSPYGASTLAGGDGKRQPTEKELSLARKQGAHVASIAAKLK 202          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SHISS (Flavoprotein wrbA OS=Shigella sonnei (strain Ss046) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  111 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 199          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SHIFL (Flavoprotein wrbA OS=Shigella flexneri GN=wrbA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SHIF8 (Flavoprotein wrbA OS=Shigella flexneri serotype 5b (strain 8401) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SHIDS (Flavoprotein wrbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_MARAV (Flavoprotein wrbA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=wrbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VPLGY      F+++EV GG+ YGA T A  DGSRQP++ EL  A  QGK+VAE+A KL
Sbjct:  111 VFTSTGT-GGGQEQTITSFWTTLAHHGMVLVPLGYGIPE-FFDISEVNGGTPYGASTIAGGDGSRQPSEKELAIARFQGKHVAELAIKL 197          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
ALTA7_ALTAL2.339e-2154.95Minor allergen Alt a 7 OS=Alternaria alternata GN=... [more]
CLAH7_CLAHE7.607e-1950.00Minor allergen Cla h 7 OS=Cladosporium herbarum GN... [more]
P25_SCHPO1.674e-1859.04P25 protein OS=Schizosaccharomyces pombe GN=obr1 P... [more]
WRBA_SALTI7.953e-1753.33Flavoprotein wrbA OS=Salmonella typhi GN=wrbA PE=3... [more]
WRBA_PARL11.357e-1653.33Flavoprotein wrbA OS=Parvibaculum lavamentivorans ... [more]
WRBA_SHISS1.772e-1652.75Flavoprotein wrbA OS=Shigella sonnei (strain Ss046... [more]
WRBA_SHIFL1.772e-1652.75Flavoprotein wrbA OS=Shigella flexneri GN=wrbA PE=... [more]
WRBA_SHIF81.772e-1652.75Flavoprotein wrbA OS=Shigella flexneri serotype 5b... [more]
WRBA_SHIDS1.772e-1652.75Flavoprotein wrbA OS=Shigella dysenteriae serotype... [more]
WRBA_MARAV1.772e-1656.18Flavoprotein wrbA OS=Marinobacter aquaeolei (strai... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
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