CK938929

Overview
NameCK938929
Unique NameCK938929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2212 contig Csv1_Contig2212:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938929 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.112e-28
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  255 MLSLSYSLPPF--------TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLSNVKEEVYGALDSFIARELEFPLITV 527
            MLSL YSLP          TK+F     ++   ++VVCAARGPRPR PRVWK RKRIGTISK+AK++ CIKGLSNVKEEVYGALDSFIA ELEFPL+ V
Sbjct:    1 MLSLRYSLPYLLLQTRESSTKLF-----TKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIV 94          
The following BLAST results are available for this feature:
BLAST of CK938929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP332_ARATH5.112e-2866.67Pentatricopeptide repeat-containing protein At4g21... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_C11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938929 ID=CK938929; Name=CK938929; organism=Citrus sinensis; type=EST; length=576bp
GGGGGCTGTTTGGATGATGGTAAAATAAAAAACGCAAGAAAAAGAAAACA
TTCCCTAGAAAATCAAAACACTGCAAGAGAAGAACATCACCAGACGAAAG
GAAAGCAACAAGAAACTTTTCCATCGACTCATTATTATCTCTGCTCTCCA
CACAGATAATTTTTTTATTTCTCCAACTCTGCAGCTTATTTTTATTCAAG
AAATGCGAAATATTTTCATTTGCAAGTGACCAAATAGAGGTTCTAATTAA
GAAGATGCTTAGTTTGAGCTATTCTTTGCCTCCCTTCACGAAAATATTTG
AACCAATCAAGATTTCCAGAAATGCCAGAAGCCTTGTGGTATGTGCTGCT
AGAGGTCCACGACCTAGATATCCTCGGGTATGGAAAGCAAGAAAGAGAAT
TGGGACAATATCCAAGTCAGCCAAGCTTGTTACTTGTATAAAAGGATTGT
CGAATGTTAAAGAAGAAGTTTATGGGGCTCTTGACTCCTTTATTGCTCGG
GAATTAGAGTTTCCATTGATTACAGTAAAGAAAGCATTGAAGACTCTTGA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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