CK938927

Overview
NameCK938927
Unique NameCK938927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938927_ssr381 microsatellite CK938927_ssr381:381..398. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:537..1342. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.582e-41
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 277
            FTINGHSYFNLVLITNVGGAGDVH+ +IKGSRT WQ MSRNWGQNWQSN+YLNGQ+LSFKVTTSDGRTV S+N APA WS+G+T++G QFR
Sbjct:  159 FTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.881e-40
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 277
            FTINGHSYFNLVLITNVGGAGDVH+  +KGSRTGWQ MSRNWGQNWQSN+YLNGQSLSFKVTTSDG+T+ S NVA A WSFG+T++GAQ R
Sbjct:  160 FTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.915e-40
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 277
            FTINGHSYFNLVL+TNVGGAGDVH+VS+KGSRT WQ MSRNWGQNWQSN+YLNGQSLSF VTTSD R+V S+NVAP +WSFG+TY+G QFR
Sbjct:  164 FTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.915e-40
Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 277
            FTINGHSYFNLVL+TNVGGAGDVH+V++KGSRT WQ MSRNWGQNWQSN  LNGQ+LSFKVT SDGRTV S N+APASWSFG+T++G QFR
Sbjct:  163 FTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.008e-38
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 274
            FT+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA   W FG+T+ G QF
Sbjct:  157 FTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.008e-38
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 274
            FT+NGHSYFNLVL+TNV GAGDV +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA   W FG+T+ G QF
Sbjct:  157 FTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.008e-38
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 274
            FTINGHSYFNLVL+TNV G GDV +VSIKGS TGWQPMSRNWGQNWQSN+YL+GQSLSF+V  SDGRTVTS NV PA W FG+T+ G QF
Sbjct:  162 FTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.283e-37
Identity = 72/91 (79.12%), Postives = 82/91 (90.11%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 274
            FTINGHSYFNLVLI+NVGGAGDVHAVSIKGS+T  WQ MSRNWGQNWQSN+Y+N QSLSF+VTTSDGRT+ S +VAP++W FG+TY G QF
Sbjct:  163 FTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.297e-36
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 277
            FTINGHSYFNLVLITNV GAGDV +VSIKG+ T WQ MSRNWGQNWQSN  L+GQ+LSFKVTTSDGRTV S N  P +WSFG+TY+G QFR
Sbjct:  162 FTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.137e-35
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 274
            FTI GHSYFNLVL+TNVGGAGDV AVS+KGSR+GWQ MS NWG NWQ+   L+GQ LSF+VT SDGRTVTS NVAP+ WSFG+T+SG QF
Sbjct:  159 FTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
The following BLAST results are available for this feature:
BLAST of CK938927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP10_ARATH7.582e-4182.42Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH2.881e-4082.42Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA5_ARATH4.915e-4082.42Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP15_ARATH4.915e-4081.32Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA4_ORYSJ6.008e-3878.89Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI6.008e-3878.89Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ORYSJ6.008e-3878.89Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA8_ARATH2.283e-3779.12Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP14_ARATH3.297e-3678.02Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP11_ORYSJ2.137e-3575.56Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004436_E07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938927 ID=CK938927; Name=CK938927; organism=Citrus sinensis; type=EST; length=806bp
GGGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCACCA
ACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTAGA
ACTGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGCAA
CACTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGATG
GCCGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTGGC
CGAACTTACTCCGGTGCTCAATTCCGCTAGGGCCACCAAGACCATTAGAG
ATTGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGTAT
ATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATAAT
ATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGAAA
AAAAGGGGCTTATTTTAAAATGGCTTATTTTTTTTCATTTTGAATTGATT
TTTATGGTTGCGTGGGGTGTCTAATTATGGGATCCTCTTATTATCTTGGG
GATCCTTTTTTTACCTTTCTTTTTGGGGGTTTCTGTTGAAGTGCAACAGA
TGGCTGAGGTGGAAATTTTTCCACCCGCCATTTGTGTTTGAAATAGCTGC
TTCTCTTTTTTTGATGCTTCTTGGAATTGCTTGCCCAGAAGCACTTTTTG
GAGTGCAAGTTTAATTGTAATCAGCAGATTTGGCTGAGTATTATGTCGTT
GGATGTAATGGCTAAATTTGTACGAGATTGGAGGTGTAAATTTCCATTTC
ATTTTA
back to top