CK938916

Overview
NameCK938916
Unique NameCK938916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.045e-42
Identity = 89/112 (79.46%), Postives = 90/112 (80.36%), Query Frame = 3
Query:   36 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY---------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            MVLKTELC+FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY                      PYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 112          

HSP 2 Score: 23.8682 bits (50), Expect = 4.045e-42
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  452 GCRPEGPQARRWWWKAVN 505
            G +P+GP+   W W+A++
Sbjct:  149 GAQPKGPKLGGWRWQALS 166          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.897e-39
Identity = 84/112 (75.00%), Postives = 88/112 (78.57%), Query Frame = 3
Query:   36 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY---------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            MVLKTELC+FSGAKIYPG+GIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+                      PYSRSIVGATLEVIQK+RTEKPEVRDAAREAAL
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAAL 112          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 84/112 (75.00%), Postives = 87/112 (77.68%), Query Frame = 3
Query:   36 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY---------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            MVLKTELC+FSG KIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKP+KL WTAMY                      PYSRSIVGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:    1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.578e-38
Identity = 82/112 (73.21%), Postives = 86/112 (76.79%), Query Frame = 3
Query:   36 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY---------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            MVLKTELC+FSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMY                      PYSRSIVGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 82/112 (73.21%), Postives = 86/112 (76.79%), Query Frame = 3
Query:   36 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY---------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            MVLKTELC+FSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMY                      PYSRSIVGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +Y                      + R IVGA L+VI+++R ++PEVR AAR AAL
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +Y                      + R IVGA L+VI+++R ++PEVR AAR AAL
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    FH R  P +++WT +Y                        R+IVGA+LE+I++RR++KP  R AAR+  L
Sbjct:    1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVKNQRAIVGASLELIKERRSQKPSDRKAARDVKL 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAARE 335
            +K E+  FSGAKIYPG+G  F+R DS++F F +SK    FH R  P ++ WT +Y                        R++VGA+LE+I++RR+ KPEVR A R+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKAQRAVVGASLELIKERRSLKPEVRKAQRD 106          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAARE 335
            +K E+  FSGAKIYPG+G  F+R DS+VF F +SK    FH R  P ++ WT +Y                        R++VGA+LE+I++RR+ KPE+R A R+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKAQRAVVGASLELIKERRSLKPEIRKAKRD 106          
The following BLAST results are available for this feature:
BLAST of CK938916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL24_PRUAV4.045e-4279.4660S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_CICAR1.897e-3975.0060S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL24_HORVU5.520e-3975.0060S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL242_ARATH3.578e-3873.2160S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH4.673e-3873.2160S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24B_SCHPO3.481e-1741.2860S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO3.481e-1741.2860S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_DEBHA3.849e-1640.3760S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24_KLULA5.027e-1640.5760S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24_ASHGO6.566e-1640.5760S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_F06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938916 ID=CK938916; Name=CK938916; organism=Citrus sinensis; type=EST; length=695bp
GGGGGAAGCCGCATCCAGCAACACCATCAGAAACCATGGTTCTCAAGACT
GAACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAGGGTATCAG
ATTTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTCTAAATGCA
AGAGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACATGGACAGCC
ATGTACAGGAAACAGCACAAGAAGAAGCGTCGTGCCACTAAGAAGCCCTA
TTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAGAAGAGAAGAA
CTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGCACTTCGTGAA
ATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAGGCAAAGAAAGC
GGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAGTAGCGTGCCTA
AGGGTGCCGCCCCGAAGGGCCCCAAGCTAGGCGGTGGTGGTGGAAAGCGG
TGAATTGCTTAGTCTTTTCAAATCTGCAGATGAGTATAAACAATTAGAAC
TTAATTTCATGTTTCTTGTATGGATTGATCAATCATGTAGACCAGATTTT
TTTGTGGTTTTTGTTTATGGTTTTGCATTGGGAGTTAATTTGCCTTTTAC
TTAATTGAATCAAAGTTTTCTCAGAAAAAAAAAAAAAAAAAAAAA
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