CK938908

Overview
NameCK938908
Unique NameCK938908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:758..1205. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938908 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.147e-28
Identity = 46/70 (65.71%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    4 VFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 213
            +FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  390 LFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CK938908 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.147e-28
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    4 VFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 192
            ++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  382 IYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CK938908 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.784e-28
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    4 VFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 216
            + ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  271 ILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CK938908 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    7 FEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 189
            F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  402 FGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CK938908 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.222e-15
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   19 NSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 192
            N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  415 NHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CK938908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD21A_ARATH2.147e-2865.71Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ2.147e-2876.19Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSPL_SOLLC4.784e-2869.01Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ3.321e-2165.57Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ1.222e-1550.00Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938908 ID=CK938908; Name=CK938908; organism=Citrus sinensis; type=EST; length=448bp
GGGGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCT
TGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACT
ATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAAC
CCATTGGGAGTGAGGGCATTACGACGCACCCCTGCTAAACCTTACTGGGC
TCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGT
AAGAGCAGTGGAAGGCCGAAGGGAGGATGAAAATATTCGTGCTTGTGAAT
GAGTTTCTCCCCGGCCTTAGTTCATTCTACTGCATTTCATTCCAAACGTT
AATGTACCGGCAGGTGGATGGTCTGTTAAATATTTATTCGGACGTTGGTT
TGGTATATAGCGTTGTAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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