CN187921

Overview
NameCN187921
Unique NameCN187921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187921 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.699e-49
Identity = 100/156 (64.10%), Postives = 119/156 (76.28%), Query Frame = -1
Query:  274 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 729
            +EA+K L Q++  G+VRAQYQLALCLH GR V  NL EA +WYL+AAEGGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V+YLELA R GE AA  VK V+ QQLSAT    +   A+   ++WR +P
Sbjct:  193 KEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAEGGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSVLYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348          
BLAST of CN187921 vs. ExPASy Swiss-Prot
Match: PODJ_CAUCR (Localization factor podJL OS=Caulobacter crescentus GN=podJ PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = -1
Query:  307 VKLLYQASIAGHVRAQYQLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRA 720
            V+LL +A+  G+  AQ+ L+     G+ GV  ++ EA RW  RAA GG  RAM+N +L Y  GEG P +   A  W ++AAD G   +Q       E GLG+       +A  +  +A RAG++ A      +  QL+A ++  A
Sbjct:  745 VELLKRAANGGYPAAQFYLSKMYEGGKNGVKVDMAEARRWSERAANGGDPRAMHNLALYYFKGEGGPRNSTTAASWFRKAADMGLVDSQFNLAQLYESGLGV--SQNPAEAYKWYVIAGRAGDSTARGRATALRSQLTAEAQQTA 887          
BLAST of CN187921 vs. ExPASy Swiss-Prot
Match: PODJ_CAUCN (Localization factor podJL OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=podJ PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = -1
Query:  307 VKLLYQASIAGHVRAQYQLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRA 720
            V+LL +A+  G+  AQ+ L+     G+ GV  ++ EA RW  RAA GG  RAM+N +L Y  GEG P +   A  W ++AAD G   +Q       E GLG+       +A  +  +A RAG++ A      +  QL+A ++  A
Sbjct:  745 VELLKRAANGGYPAAQFYLSKMYEGGKNGVKVDMAEARRWSERAANGGDPRAMHNLALYYFKGEGGPRNSTTAASWFRKAADMGLVDSQFNLAQLYESGLGV--SQNPAEAYKWYVIAGRAGDSTARGRATALRSQLTAEAQQTA 887          
The following BLAST results are available for this feature:
BLAST of CN187921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB84_ARATH1.699e-4964.10F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
PODJ_CAUCR3.699e-1235.17Localization factor podJL OS=Caulobacter crescentu... [more]
PODJ_CAUCN3.699e-1235.17Localization factor podJL OS=Caulobacter crescentu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187921 ID=CN187921; Name=CN187921; organism=Citrus sinensis; type=EST; length=732bp
AGTTAAAAAGTCAAAACAAACAAAATTAGGATTTTCCACCCCTAATTGCG
AACAACACAAGTTCATCAGAGCTATAAAGCTAAATGCTTCTAAGAGCACG
TATAATATTTATAATTTTTCAAAAACAGGATCAAAAGGGGAAGGGAAAAG
ATAAAAGAGGACATAGTATGTACTAACGGAGAAAACTAATGGGAAGAAAA
AAAAGCGTAAAGGAATTTAGTATAATAGCTATAAAGCCTGTAATCCATCA
TCAGGTCAGACTCAGTGAAGGGAAGGCATAGCACGCCAACTGTCGACGAC
TAACATGGCACGATCACGTGAAGTAGCTGACAGTTGTTGGAGAATTACAT
TCTTGACATGATCTGCTGCTGTTTCACCAGCACGTGTTGCAAGTTCTAGG
TAAACCACAGCTTTCATCATCTCTCCTTCCGTAAATAGACCGAGCCCATG
CTCAAGTTGAGCTTTGCCGTGACCACAATCAGCTGCTCTTTTCATCCATT
TCCTCGCTTGTCTGTGACTCAGTGGCAAGCCTTCCCCAAAGGAATAGCAA
AGAGAGGTGTTGTACATAGCACGCACATAGCCACCTTCAGCAGCTCTTAA
ATACCACCTAGCAGCCTCTTGAAGATTGAAATCCACTCCTCGACCTCTAT
GCAGGCAAAGTGCAAGTTGATACTGAGCTCGAACATGGCCAGCAATCGAT
GCTTGATACAACAACTTCACAGCTTCCTCTGC
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