CN187920

Overview
NameCN187920
Unique NameCN187920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig542 contig Csv1_Contig542:206..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187920 vs. ExPASy Swiss-Prot
Match: ASPL1_ARATH (Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.821e-37
Identity = 91/218 (41.74%), Postives = 121/218 (55.50%), Query Frame = 1
Query:   94 HRYSDP----VKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPL----TFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNS--SSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQ-----SKSVDSRISFGCGRVQTGSFLD 702
            HR+SD     +K   + D LP K S  YY  LA  D  FR +   L A+     P     T S+GND       G+LHYT + +G P++SF+VALDTGS+L W+PC+CV C    ++  SS    D N Y+P++SSTS    C+  LC+    C S    CPY V YLS  T S+G LVED+LHL  +        S SV +R+  GCG+ Q+G +LD
Sbjct:   31 HRFSDEGRASIKTPSSSDSLPNKQSLEYYRLLAESD--FRRQRMNLGAKVQSLVPSEGSKTISSGND------FGWLHYTWIDIGTPSVSFLVALDTGSNLLWIPCNCVQCAPLTSTYYSSLATKDLNEYNPSSSSTSKVFLCSHKLCDSASDCESPKEQCPYTVNYLSGNTSSSGLLVEDILHLTYNTNNRLMNGSSSVKARVVIGCGKKQSGDYLD 240          
BLAST of CN187920 vs. ExPASy Swiss-Prot
Match: ASPL2_ARATH (Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 47/148 (31.76%), Postives = 74/148 (50.00%), Query Frame = 1
Query:  262 GNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPC-DCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA--GSNCPYQVRYLSDGTMSTGFLVEDVLHL--ATDEKQSKSVDSRISFGCGRVQTG 690
            G D+ R++S+G L++T + +G P   + V +DTGSD+ W+ C  C  C    N +       +++  N SSTS KV C+   C    Q  S      C Y + Y  + T S G  + D+L L   T + ++  +   + FGCG  Q+G
Sbjct:   63 GGDS-RVDSVG-LYFTKIKLGSPPKEYHVQVDTGSDILWINCKPCPKCPTKTNLN----FRLSLFDMNASSTSKKVGCDDDFCSFISQSDSCQPALGCSYHIVYADEST-SDGKFIRDMLTLEQVTGDLKTGPLGQEVVFGCGSDQSG 203          
The following BLAST results are available for this feature:
BLAST of CN187920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASPL1_ARATH1.821e-3741.74Aspartic proteinase-like protein 1 OS=Arabidopsis ... [more]
ASPL2_ARATH2.027e-1231.76Aspartic proteinase-like protein 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187920 ID=CN187920; Name=CN187920; organism=Citrus sinensis; type=EST; length=702bp
AGGCGTAATTCTCCTGTTTGTGTCTTATTGATATTGTTAAGCTGTTGTGC
TGGGTGCTGTTTCGGGTTCGGTACGTTCGGTTTTGATTTCCACCATCGTT
ATTCGGATCCGGTTAAGGGAATTCTAGCCGTTGATGACTTACCGAAGAAA
GGAAGTTTCGCGTACTATTCTGCTCTGGCCCACCGTGACCGTTATTTCCG
ACTACGAGGGCGGGGGCTTGCTGCGCAGGGGAATGATAAAACGCCGTTAA
CTTTTAGCGCCGGCAACGATACTTATCGACTCAATTCTTTGGGATTCTTA
CATTATACCAATGTTTCGGTGGGACAACCAGCTTTATCATTTATAGTGGC
ACTTGACACTGGCAGTGACCTCTTCTGGTTGCCATGCGACTGTGTTAGTT
GTGTGCATGGCTTGAACTCATCATCCGGACAGGTGATTGATTTTAACATC
TACAGTCCTAATACATCATCAACAAGTTCAAAGGTTCCTTGTAACAGCAC
GTTGTGTGAACTACAAAAGCAATGCCCTTCAGCTGGTAGCAACTGTCCTT
ATCAAGTTCGTTATCTTTCTGATGGCACTATGTCAACTGGGTTCTTGGTA
GAGGATGTGTTGCACTTAGCCACAGATGAAAAGCAAAGTAAATCGGTTGA
TTCTCGGATTTCTTTCGGCTGTGGTCGGGTTCAGACTGGTTCATTCTTGG
AT
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