CN187912

Overview
NameCN187912
Unique NameCN187912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig646 contig Csv1_Contig646:303..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.355e-37
Identity = 78/111 (70.27%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  276 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQA 608
            FSKE NNL N +S+KHSGL N KTVTIQ   KD  VVLAT KTKKQNKP    +KS ++KEFPRM+KAV NQV DNYYRPDLKKAALAR SA+++ L+V+KSG K+RNRQA
Sbjct:   33 FSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143          
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.527e-36
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  276 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQA 608
            FSKE NNL N NS+KHSGL N KTVTIQ  GKD  VVL T KTK+QNKP    +KS ++KEF RM+K V NQV DNYYRPDLKKAALAR SA+++ L+V+KSG K+RNRQA
Sbjct:   33 FSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143          
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = -2
Query:  270 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQATK 608
            +S EPNNL   NSF+++GL + KTV ++P      VV+   +   Q KPA+ + ++ + K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:   25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKRTRPTK 135          
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = -2
Query:  270 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQATK 608
            +S EPNNL   NSF+++GL + KTV ++P      VV+   +   Q KPA+ + ++ + K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:   25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = -2
Query:  270 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQATK 608
            +S EPNNL   NSF+++GL + KTV ++P      VV+   +   Q KPA+ + ++ + K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:   25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKPSRPTK 135          
The following BLAST results are available for this feature:
BLAST of CN187912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL281_ARATH2.355e-3770.2760S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL282_ARATH1.527e-3668.4760S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
RL28_HUMAN9.965e-1235.4060S ribosomal protein L28 OS=Homo sapiens GN=RPL28... [more]
RL28_MOUSE1.301e-1135.4060S ribosomal protein L28 OS=Mus musculus GN=Rpl28... [more]
RL28_BOVIN1.700e-1135.4060S ribosomal protein L28 OS=Bos taurus GN=RPL28 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187912 ID=CN187912; Name=CN187912; organism=Citrus sinensis; type=EST; length=609bp
TTTTTTTTTTTTTTTTTGCGCTTAAAACTTTTACTCATCTCATGATACAA
AATAACACGCCCATTCCACCTAAAAACAAAATCAAGTTAAAATCTAAATT
TTGACCCTTTTCCCAGTGGGGGGGAACGGGCGAATATCTCCCCTACATAA
AAAATTAAACATAAATGAAAACTGTCTTCTTGATACTTATAAAAACTAAA
ATAAAACCCTTCCCAGAACAAAGCATAACATCCCTCGATTCCTCCTAAAG
TTCACTTCCTAACGGGAACCTTCGTAGCCTGCCTGTTTCTCTTTTTGACA
CCCGATTTTGAGACCTTTAGGCTCCTGTTAACAGCACTAAACCTTGCAAG
GGCTGCCTTCTTCAAGTCTGGCCTGTAGTAATTATCAGCAACCTGATTGA
CAACAGCCTTAGCCATTCTTGGGAACTCCTTCCTCATGGGGGATTTGTGA
AACAAGCTGGCAGGCTTGTTCTGCTTCTTGGTCTTTGCAGTGGCCAACAC
CACAAACAGGTCCTTGCCTCCAGGCTGAATGGTCACAGTCTTCCCATTCC
CCAAACCGGAATGTTTGAAGGAATTAAAGTTGTAAAGGTTGTTGGGTTCC
TTGCTGAAA
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