CN187912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.355e-37 Identity = 78/111 (70.27%), Postives = 90/111 (81.08%), Query Frame = -2 Query: 276 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQA 608 FSKE NNL N +S+KHSGL N KTVTIQ KD VVLAT KTKKQNKP +KS ++KEFPRM+KAV NQV DNYYRPDLKKAALAR SA+++ L+V+KSG K+RNRQA Sbjct: 33 FSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.527e-36 Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = -2 Query: 276 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQA 608 FSKE NNL N NS+KHSGL N KTVTIQ GKD VVL T KTK+QNKP +KS ++KEF RM+K V NQV DNYYRPDLKKAALAR SA+++ L+V+KSG K+RNRQA Sbjct: 33 FSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12 Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = -2 Query: 270 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQATK 608 +S EPNNL NSF+++GL + KTV ++P VV+ + Q KPA+ + ++ + K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKRTRPTK 135
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11 Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = -2 Query: 270 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQATK 608 +S EPNNL NSF+++GL + KTV ++P VV+ + Q KPA+ + ++ + K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CN187912 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11 Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = -2 Query: 270 FSKEPNNLYNFNSFKHSGLGNGKTVTIQPGGKDLFVVLATAKTKKQNKPASLFHKSPMRKEFPRMAKAVVNQVADNYYRPDLKKAALARFSAVNRSLKVSKSGVKKRNRQATK 608 +S EPNNL NSF+++GL + KTV ++P VV+ + Q KPA+ + ++ + K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKPSRPTK 135 The following BLAST results are available for this feature:
BLAST of CN187912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN187912 ID=CN187912; Name=CN187912; organism=Citrus sinensis; type=EST; length=609bpback to top |