CN187911

Overview
NameCN187911
Unique NameCN187911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4172 contig Csv1_Contig4172:75..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187911 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    4 VLPPRPGKNLSDMELDDCEEVTMHDVNIDEEMRRKRXXXXXXXXXXXXXPAMPRVQCAQQ 183
            VLPPR    LSDMELD+CEE T+HDVNI+EEMRRK+              A  RVQCAQQ
Sbjct:  355 VLPPRTSVQLSDMELDECEETTLHDVNIEEEMRRKQAQEAYDEDEDMHGGAQ-RVQCAQQ 413
The following BLAST results are available for this feature:
BLAST of CN187911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJH_CUCSA5.908e-1158.33DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187911 ID=CN187911; Name=CN187911; organism=Citrus sinensis; type=EST; length=467bp
AGTGTACTACCTCCGAGGCCAGGCAAGAACCTGTCTGACATGGAGCTGGA
TGATTGTGAGGAGGTCACCATGCATGATGTTAACATTGATGAAGAGATGA
GGCGTAAACGGTATCAACAGCAGCAAGAGGCATATGATGAAGATGATGAA
CCAGCAATGCCAAGAGTCCAGTGTGCTCAGCAATGAGGCAAATTCAATTT
TGCCTTTCCTGGTCCCCTTGCCTATCAGAGGCAATGAGCATTTTCAATTT
GGCATCTAGTATGTTTTTTTTACCGCTGCATGATTTTTGTGCTAATTAAT
ATTATAAGCAAGCAGTAGCAGTTATTTACCAGGCAGAAGGTGGATAGTAT
TTATATACACACACATATGCATATGTATATGCAGCAGCGGATCAGATGCT
TATGTCATTTAAATTGGATTTTTTGATGTATTGGATAAATTCAGATGCTT
GTTGCTTGATAAAAAAA
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