CN187909

Overview
NameCN187909
Unique NameCN187909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13737 contig Csv1_Contig13737:324..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.534e-49
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = -1
Query:  142 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFIN 540
            LNTLGIS  RIDYAPYGQ PPH HPRA+EIL+++EGTL+VGFV+S+Q NN L +KVLN GD FVFPIG+IHFQ NIGKT AVA++ L+SQ  G ITIAD VFG+ PPINPD LA+AFQLD   VKDL+ KF N
Sbjct:   89 LNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.534e-49
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = -1
Query:  142 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFIN 540
            LNTLGIS  RIDYAPYGQ PPH HPRA+EIL+++EGTL+VGFV+S+Q NN L +KVLN GD FVFPIG+IHFQ NIGKT AVA++ L+SQ  G ITIAD VFG+ PPINPD LA+AFQLD   VKDL+ KF N
Sbjct:   89 LNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.534e-49
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = -1
Query:  142 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFIN 540
            LNTLGIS  RIDYAPYGQ PPH HPRA+EIL+++EGTL+VGFV+S+Q NN L +KVLN GD FVFPIG+IHFQ NIGKT AVA++ L+SQ  G ITIAD VFG+ PPINPD LA+AFQLD   VKDL+ KF N
Sbjct:   90 LNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 222          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.616e-49
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = -1
Query:  142 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFIN 540
            LNTLGIS  RIDYAPYGQ PPH HPRA+EIL+++EGTL+VGFV+S+Q NN L +KVLN GD FVFPIG+IHFQ NIGKT AVA++ L+SQ  G ITIAD VFG+ PPINPD LA+AFQLD   VKDL+ KF N
Sbjct:   89 LNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.103e-48
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = -1
Query:  142 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFIN 540
            LNT+GIS  RIDYAPYGQ PPH HPRA+EIL+++EGTL+VGFV+S+Q NN L +KVL  GD FVFPIG+IHFQ NIGKT AVA++ L+SQ  G ITIAD VFG+ PPINPD LA+AFQLD   VKDL+ KF N
Sbjct:   90 LNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDLEAKFRN 222          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.815e-45
Identity = 90/135 (66.67%), Postives = 107/135 (79.26%), Query Frame = -1
Query:  136 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKFINGH 540
            LNTLG+S  RID+AP GQ PPH HPRA+EIL+V+EGTL VGFVTS+Q NN L SKVL  GD FVFPIG+IHFQ N+G+TNAVA++ L SQ PG ITIADAVFG+ P I P+ LAKAFQLD   VK L+ +F + +
Sbjct:   91 LNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNVVKYLEARFSSNY 225          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.815e-45
Identity = 87/131 (66.41%), Postives = 107/131 (81.68%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNT+GIS  RIDYAP+GQ PPH HPR SEIL+++EGTL+VGFV+S+Q NN L +KVL+ GD FVFPIG+IHFQ NIGK  A+A++ L+SQ  G ITIA+ VFG+NPPI P+ LA+AFQLD   VK+LQ KF
Sbjct:   89 LNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQAKF 219          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.371e-45
Identity = 87/131 (66.41%), Postives = 107/131 (81.68%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNT+GIS  RIDYAP+GQ PPH HPR SEIL+++EGTL+VGFV+S+Q NN L +KVL+ GD FVFPIG+IHFQ N+GK  AVA++ L+SQ  G ITIA+ VFG+NPPI P+ LA+AFQLD   VK+LQ KF
Sbjct:   89 LNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.371e-45
Identity = 87/131 (66.41%), Postives = 107/131 (81.68%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNT+GIS  RIDYAP+GQ PPH HPR SEIL+++EGTL+VGFV+S+Q NN L +KVL+ GD FVFPIG+IHFQ N+GK  AVA++ L+SQ  G ITIA+ VFG+NPPI P+ LA+AFQLD   VK+LQ KF
Sbjct:   89 LNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of CN187909 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.423e-44
Identity = 93/131 (70.99%), Postives = 105/131 (80.15%), Query Frame = -1
Query:  148 LNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQHKF 540
            LNTLGIS  RIDYA  GQ PPH HPRA+EIL+V +GTL VGFVTS+  +N L SKVLN+GD FVFP GLIHFQ NIGK  AVA++AL+SQ PG ITIA+ VFGANP INP  LAKAFQL+P+ V DLQ KF
Sbjct:   92 LNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNP-DNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGANPAINPTILAKAFQLNPRVVMDLQTKF 221          
The following BLAST results are available for this feature:
BLAST of CN187909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL117_ARATH3.534e-4971.43Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH3.534e-4971.43Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL114_ARATH3.534e-4971.43Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL119_ARATH4.616e-4971.43Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL113_ARATH5.103e-4869.92Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL17_ARATH1.815e-4566.67Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL116_ARATH1.815e-4566.41Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL120_ARATH2.371e-4566.41Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL118_ARATH2.371e-4566.41Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL111_ARATH3.423e-4470.99Germin-like protein subfamily 1 member 11 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187909 ID=CN187909; Name=CN187909; organism=Citrus sinensis; type=EST; length=540bp
GCTACATCAGCCTGAAGAGAGGTTCATGAGCCATATTTTTTTTACATTAA
TTAAGATATGATAATCTGGACCTAAAACAATAAAGCCACTAGTAAAGAGG
CCATTTATATTAAAGCTCATTAATTCCTTCTCCTAATGGCCATTAATGAA
CTTATGCTGAAGATCTTTCACTGTCTTCGGGTCCAACTGGAATGCCTTGG
CAAGAAAATCGGGATTTATTGGAGGATTGGCTCCAAAGACCGCGTCGGCT
ATGGTAATTTCACCGGGGAACTGGCTGTTGAGAGCAGAATAGGCAACTGC
ATTTGTTTTTCCAATGTTGAATTGGAAATGAATCAAACCAATTGGAAACA
CAAAAGCATCTCCCTTATTCAGAACTTTTGAGATGAGTGTGTTATTCAGT
TGGTCTGATGTCACAAAACCGACGTGAAGAGTTCCTTCCAGGACCAACAG
GATTTCACTGGCACGGGGGTGAATATGAGGTGGCCTTTGGCCATATGGCG
CATAGTCAATACGGAATGCTGATATGCCAAGGGTGTTGAG
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