CN187903

Overview
NameCN187903
Unique NameCN187903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN187903_ssr705 microsatellite CN187903_ssr705:705..716. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4194 contig Csv1_Contig4194:3..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 9.214e-60
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = -2
Query:  308 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP 691
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  VEPQ  + P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAP 128          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.681e-59
Identity = 115/131 (87.79%), Postives = 124/131 (94.66%), Query Frame = -2
Query:  299 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVF 691
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +VE Q  + P VF
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVF 131          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.501e-59
Identity = 116/128 (90.62%), Postives = 121/128 (94.53%), Query Frame = -2
Query:  308 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP 691
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  VEPQ  + P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAP 128          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 7.800e-59
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = -2
Query:  299 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP-PVF 691
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V+PQ  + P P F
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAF 132          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 2.509e-57
Identity = 115/133 (86.47%), Postives = 124/133 (93.23%), Query Frame = -2
Query:  299 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVE--VEPQSMITPPVF 691
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+ALGMSD+ G+V+   EPQ++   P +
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSY 133          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.082e-39
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = -2
Query:  338 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 691
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 6.865e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = -2
Query:  356 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 691
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 6.865e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = -2
Query:  356 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 691
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.171e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2
Query:  326 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 691
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of CN187903 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.529e-38
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = -2
Query:  326 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 691
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
The following BLAST results are available for this feature:
BLAST of CN187903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS172_ARATH9.214e-6091.4140S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS173_ARATH2.681e-5987.7940S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS174_ARATH3.501e-5990.6340S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS171_ARATH7.800e-5988.6440S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_SOLLC2.509e-5786.4740S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS17B_SCHPO3.082e-3967.8040S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17_THEPA6.865e-3966.9640S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN6.865e-3966.9640S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17_BOVIN1.171e-3863.1140S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_PIG1.529e-3863.1140S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005D06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187903 ID=CN187903; Name=CN187903; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTAACGAGCAACTGCAAAACTAATATGCATTATAAC
TTCAGTAAGTTGCATCCCAGTAAAACAAATAAAATGAAAAGACAAAACAA
GTCCATTAAATCAACTAAAGTATGATGCCAGAGTTCAAGTTTTAACTAAA
CACCCTTCTTAAAATAGTAAAGAAAACTAGTCACAAAAGCATTCATAACA
AACACAAGAAGTACTGATTAATAAGAACCTAAACTTCTCATTCTTGATTG
AGCCACAAAGCCTCAATTAACTCAGTACCTCCTGCCACCACCCCGACCAA
AAACTGGAGGAGTAATCATGCTCTGTGGCTCAACTTCAACAAGCCCAGAA
ATGTCGGACATGCCAAGAGCAGCAAGCATATCCAAGGTTTCCTTGTCAAC
CTTAATTTCATCAGTCTTAATAGCTGACTCATCAGGCACAAAGTCCATGC
GGCGTTCGCGCTCCTCTTCCTGCAATTTAAGGGAGATTCCACGAACTGGA
CCCTTCTGAATCCTCTTCATCAAATGGGTTGAGAACCCAGCAATTTTGTT
ACGCAGCCTCTTCGAGGGGATGATAGCAACCTCCTCCAAAATTTTCTTGT
TGGTATGGAAGTCCAGTGTCATTCTTGAGTAGTACCTCTCAATCACCTGG
CGAGAGGACTTCTTCACGGTCTTGGTACGAACACGACCCATTTCAGTTTA
AGAAGCTGCTGCTGCTGTCTTGAAGAAGACAAAGACGGTGAAGCAGAAGA
GCTTGAGATGTCGAGAGATTGCGGCAGCTAAAGCGAAGCCT
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