CK938804

Overview
NameCK938804
Unique NameCK938804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:98..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.208e-46
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            GQVIGCHTVEAWNEQLQK N+TK L+VVDFTASW GPCRFIAPFLA+LAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+EL
Sbjct:    6 GQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDEL 105          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.224e-45
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            GQVI CHTVE WNEQLQK+NE+K LVVVDFTASW GPCRFIAPF A LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+EL
Sbjct:    6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 105          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.687e-42
Identity = 82/100 (82.00%), Postives = 90/100 (90.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            GQVIG HTV+AWNE LQK  + K+L+VVDFTASW GPC+FIA F A+LAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+EL
Sbjct:    5 GQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDEL 104          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.921e-39
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            GQV GCH VE WNE  +K  ETK+LVVVDFTASW GPCRFIAP LA +AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEEL
Sbjct:   12 GQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEEL 111          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.829e-34
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G+VI CHT+E WNE+++ +NE+K+L+V+DFTASW  PCRFIAP  A++AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+
Sbjct:    5 GEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEI 104          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.189e-32
Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G V  CH+ E W  +LQ++ +TK+LV VDFTA+W GPCR I P   +L+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L
Sbjct:    4 GNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDL 103          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.900e-32
Identity = 59/99 (59.60%), Postives = 83/99 (83.84%), Query Frame = 2
Query:  116 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            QVI CHTV+ WNE+ QK+ ++ +L+V+DFTASW GPCR I P++++LAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA+K+EL
Sbjct:    6 QVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDEL 104          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.928e-31
Identity = 62/100 (62.00%), Postives = 82/100 (82.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G+VI CHTVE W E+L+ +NE+K+L+V+DFTA+W  PCRFIAP  A LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I + VVGA KEE+
Sbjct:    5 GEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEI 104          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.824e-31
Identity = 61/100 (61.00%), Postives = 79/100 (79.00%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            G+VI  H++E W  Q++++N  K+LVV+DFTASW GPCR +AP  A LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 117          
BLAST of CK938804 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.228e-30
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 2
Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWGGPCRFIAPFLAKLAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 412
            GQVIGCHT + W  QL K+ E+ +L+V+DFTASW  PCR IAP    LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK+VGA KE+L
Sbjct:    6 GQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDL 106          
The following BLAST results are available for this feature:
BLAST of CK938804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXH_RICCO4.208e-4687.00Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH1.224e-4586.00Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC3.687e-4282.00Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC2.921e-3974.00Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH2.829e-3462.00Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA1.189e-3261.00Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_FAGES5.900e-3259.60Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH3_ARATH2.928e-3162.00Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT3.824e-3161.00Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH4_ARATH4.228e-3060.40Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_H12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938804 ID=CK938804; Name=CK938804; organism=Citrus sinensis; type=EST; length=412bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAGANNNGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
AAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAG
AAAGAGGAACTG
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