CK938802

Overview
NameCK938802
Unique NameCK938802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 3.008e-60
Identity = 114/139 (82.01%), Postives = 121/139 (87.05%), Query Frame = 1
Query:   85 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            MS+RK +EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGP            GMK GRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.131e-60
Identity = 118/139 (84.89%), Postives = 121/139 (87.05%), Query Frame = 1
Query:   85 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            MSRRK REPKEENV LGP VR+GE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRATGGNKTKTPGP            GMK GRIEDVTP+PTDST
Sbjct:    1 MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.753e-60
Identity = 116/137 (84.67%), Postives = 121/137 (88.32%), Query Frame = 1
Query:   91 RRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            R+K REPKEENV LGPAVR+GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLA+QDV+ RCKELGITALHIKLRATGGNKTKTPGP            GMK GRIEDVTP+PTDST
Sbjct:    4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.547e-59
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 1
Query:   85 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            MSRRK R+ KEE VTLGPAV DGEHVFGVA IFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+TRCKELGITALHIKLRATGGNKTKTPG             GMK GRIEDVTPIP+DST
Sbjct:    1 MSRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.547e-59
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = 1
Query:   85 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            MS+RK +EPK E VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGP            GMK GRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.264e-58
Identity = 112/139 (80.58%), Postives = 120/139 (86.33%), Query Frame = 1
Query:   85 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            MS+RK +EPK + VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGP            GMK GRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.107e-54
Identity = 105/135 (77.78%), Postives = 114/135 (84.44%), Query Frame = 1
Query:   97 KNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            K  E  +E V+LGP VR+GEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKELGITALHIKLRATGGN+TKTPGP            GMK GRIEDVTPIPTDST
Sbjct:    8 KGDEAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDST 142          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS14_PODCA (40S ribosomal protein S14 OS=Podocoryne carnea GN=RPS14 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.467e-54
Identity = 104/140 (74.29%), Postives = 117/140 (83.57%), Query Frame = 1
Query:   85 MSRRKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            M+ RK + PKEE V +LGP V DGE+VFGVAHIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKE+GITALH+KLRATGGN+TKTPGP            GMK GRIEDVTPIP+D T
Sbjct:    1 MAPRKGKAPKEEQVISLGPQVADGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCT 140          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 7.177e-54
Identity = 105/140 (75.00%), Postives = 117/140 (83.57%), Query Frame = 1
Query:   85 MSRRKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRATGGN+TKTPGP            GMK GRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of CK938802 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 7.177e-54
Identity = 105/140 (75.00%), Postives = 117/140 (83.57%), Query Frame = 1
Query:   85 MSRRKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPXXXXXXXXXXXXGMKFGRIEDVTPIPTDST 501
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRATGGN+TKTPGP            GMK GRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
The following BLAST results are available for this feature:
BLAST of CK938802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS143_ARATH3.008e-6082.0140S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS141_MAIZE5.131e-6084.8940S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_MAIZE8.753e-6084.6740S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS14_LUPLU2.547e-5984.1740S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS142_ARATH2.547e-5981.2940S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS141_ARATH1.264e-5880.5840S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_CHLRE1.107e-5477.7840S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_PODCA2.467e-5474.2940S ribosomal protein S14 OS=Podocoryne carnea GN=... [more]
RS14_MOUSE7.177e-5475.0040S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN7.177e-5475.0040S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938802 ID=CK938802; Name=CK938802; organism=Citrus sinensis; type=EST; length=764bp
CGGGGATTGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCC
TAGCCTTCTCAATCCATCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGA
ATAGGGAGCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGAT
GGGGAGCATGTTTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATAC
ATTTATTCATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCA
CTGGTGGTATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCT
GCCATGCTTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAAT
CACTGCTCTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAA
CACCTGGTCCAAGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGG
ATGAAATTTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCAC
ACGCAGAAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTG
TCCGATTGTCTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTT
AAAGTTAGTTGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTAT
CTGTCGCTATTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGG
CGGCCTTGAGAGCATATGGCATTACTGGTGTCTTGCATTGCGTGTTATGT
CATTGAATTAATTT
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