CK938798

Overview
NameCK938798
Unique NameCK938798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:71..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.321e-86
Identity = 154/183 (84.15%), Postives = 167/183 (91.26%), Query Frame = 2
Query:   83 MVISTTETDSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            MV+S T + S   ++STFAS YVR ++PRFKMPDNS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWM PECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVGVGTVGSSEAIMLAGLAFKRKWQ K+K QGKP DKPNI+TGANVQVCWEKFARYFEVELKEVKL
Sbjct:    1 MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.549e-85
Identity = 150/184 (81.52%), Postives = 167/184 (90.76%), Query Frame = 2
Query:   83 MVISTTET-DSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            MV++TT   DS E L+ TFAS YV+  +P+FKMP  SMPKEAAYQ++NDELMLDGNPRLNLASFV+TWM PECDKL+M+SINKNYVDMDEYPVTTELQNRCVNM+AHLF+ PV DD+TAVGVGTVGSSEAIMLAGLAFKRKWQ K K +GKP+DKPNI+TGANVQVCWEKFARYFEVELKEVKL
Sbjct:    1 MVLTTTSIRDSEESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAVGVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL 184          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 7.248e-85
Identity = 150/183 (81.97%), Postives = 167/183 (91.26%), Query Frame = 2
Query:   83 MVISTTETDSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            MV+S   ++S   ++STFAS YVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWM PECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVGVGTVGSSEAIMLAGLAFKRKWQ K K +GKP DKPNI+TGANVQVCWEKFARYFEVELKEVKL
Sbjct:    1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.031e-78
Identity = 138/183 (75.41%), Postives = 159/183 (86.89%), Query Frame = 2
Query:   83 MVISTTETDSREILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            MV++ T T+   +  + F S YVR  +P++++ +NS+PK+AAYQ+I DELMLDGNPRLNLASFVTTWM PECDKL+M SINKNYVDMDEYPVTTELQNRCVN+IA LFN P+ + +TAVGVGTVGSSEAIMLAGLAFKRKWQ K K +GKPYDKPNI+TGANVQVCWEKFARYFEVELKEV L
Sbjct:    1 MVLTKTATNDESVC-TMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNL 182          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 82/177 (46.33%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  104 TDSR-EILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            TD R E+L+S F +  +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW      KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++++  GKP DKPN++ G  VQ+CW KFARY++VEL+E+ +
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM 182          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 82/177 (46.33%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  104 TDSR-EILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            TD R E+L+S F +  +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW      KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++++  GKP DKPN++ G  VQ+CW KFARY++VEL+E+ +
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM 182          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 82/177 (46.33%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  104 TDSR-EILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            TD R E+L+S F +  +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW      KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++++  GKP DKPN++ G  VQ+CW KFARY++VEL+E+ +
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM 182          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 82/177 (46.33%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  104 TDSR-EILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            TD R E+L+S F +  +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW      KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++++  GKP DKPN++ G  VQ+CW KFARY++VEL+E+ +
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM 182          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 82/177 (46.33%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  104 TDSR-EILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            TD R E+L+S F +  +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW      KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++++  GKP DKPN++ G  VQ+CW KFARY++VEL+E+ +
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM 182          
BLAST of CK938798 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.690e-41
Identity = 82/177 (46.33%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  104 TDSR-EILNSTFASXYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMGPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKIKEQGKPYDKPNIITGANVQVCWEKFARYFEVELKEVKL 631
            TD R E+L+S F +  +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW      KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++++  GKP DKPN++ G  VQ+CW KFARY++VEL+E+ +
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM 182          
The following BLAST results are available for this feature:
BLAST of CK938798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_PETHY1.321e-8684.15Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE_SOLLC5.549e-8581.52Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE1_ARATH7.248e-8581.97Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH5.031e-7875.41Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCEB_SHIFL1.690e-4146.33Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI1.690e-4146.33Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECO571.690e-4146.33Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL1.690e-4146.33Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI1.690e-4146.33Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL61.690e-4146.33Glutamate decarboxylase alpha OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_A11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938798 ID=CK938798; Name=CK938798; organism=Citrus sinensis; type=EST; length=632bp
TCTTTCCTTTGTATCTCAGCAATTTCTATTCATTTCTCTCATACTCAAGA
GTCTCTCTTCTCTGCACAAAACAAAAACAAAAATGGTGATTTCAACGACA
GAAACAGACTCCAGGGAGATTTTGAACTCCACATTTGCCTCNNNATATGT
CCGTGCTGCTATTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAAGG
AGGCAGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCA
AGGCTGAACTTGGCATCTTTTGTGACCACTTGGATGGGGCCCGAGTGTGA
TAAGCTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGAAT
ACCCTGTAACCACAGAGCTCCAAAATCGGTGTGTGAATATGATTGCCCAC
CTATTTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGAC
TGTAGGTTCATCAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGA
AGTGGCAGCAGAAGATAAAAGAGCAAGGCAAACCCTATGATAAGCCCAAT
ATAATCACTGGAGCTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTA
CTTTGAGGTTGAGCTGAAGGAAGTGAAACTGG
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