CK938793

Overview
NameCK938793
Unique NameCK938793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938793_ssr21 microsatellite CK938793_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938793_ssr65 microsatellite CK938793_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12845 contig Csv1_Contig12845:69..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938793 vs. ExPASy Swiss-Prot
Match: R3HD1_HUMAN (R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  296 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVR 841
            FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL     ++ ++  G  ++V KT+ ++ P  + +E       + DK E   K  I +R N+      N+   +    R   S+EER+EEY RAR RIFS  S  + E+ +       ++    +  R+I R
Sbjct:  156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-----DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASSTQQRRQIFR 331          
BLAST of CK938793 vs. ExPASy Swiss-Prot
Match: R3HD2_MOUSE (R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.423e-12
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  296 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPN 763
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+  +  N
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306          
BLAST of CK938793 vs. ExPASy Swiss-Prot
Match: R3HD2_BOVIN (R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.423e-12
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  296 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPN 763
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+  +  N
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306          
BLAST of CK938793 vs. ExPASy Swiss-Prot
Match: ARP21_MOUSE (cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 53/190 (27.89%), Postives = 102/190 (53.68%), Query Frame = 2
Query:  296 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTL---TQVSTDMKNIGFNRDEREIVR 841
            FL+  L+N  R R+ +L+ME ++  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++SEES K   L++   +I +  N   ++   +   +RS  +S+EER+EEY R R RIF+  S  + E      +++  DM        +R++ R
Sbjct:  151 FLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQNRMHPFRDD--RRS--KSIEEREEEYQRVRERIFAHDSVCSQESLFLDNSRLQEDMHICNETYKKRQLFR 330          
BLAST of CK938793 vs. ExPASy Swiss-Prot
Match: ARP21_HUMAN (cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-11
Identity = 51/173 (29.48%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  296 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR------SVEERKEEYDRARARIFSGPSSPNSEDTLTQVS 790
            FL+  L+N  R R+ +L+ME +I  F+ + +  + +F    +SY R+  HRV+ ++GL     ++ ++  G  +++ KT+ ++ P  R  E +  ++ EES K       I +R N+      N+   +  P R      S+EER+EEY R R RIF+  S  + E    + S
Sbjct:  152 FLINTLKNNSRDRMILLKMEQEIIDFIADNNNHYKKFPQM-SSYQRMLVHRVAAYFGL-----DHNVDQTGKSVIINKTSSTRIPEQRFCEHLKDEKGEESQKR-----FILKRDNSSIDKEDNQQN-RMHPFRDDRRSKSIEEREEEYQRVRERIFAHDSVCSQESLFVENS 312          
The following BLAST results are available for this feature:
BLAST of CK938793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
R3HD1_HUMAN1.300e-1230.48R3H domain-containing protein 1 OS=Homo sapiens GN... [more]
R3HD2_MOUSE8.423e-1230.86R3H domain-containing protein 2 OS=Mus musculus GN... [more]
R3HD2_BOVIN8.423e-1230.86R3H domain-containing protein 2 OS=Bos taurus GN=R... [more]
ARP21_MOUSE1.100e-1127.89cAMP-regulated phosphoprotein 21 OS=Mus musculus G... [more]
ARP21_HUMAN4.180e-1129.48cAMP-regulated phosphoprotein 21 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004438_B04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938793 ID=CK938793; Name=CK938793; organism=Citrus sinensis; type=EST; length=875bp
GGGGGGCCTTTGTCTTCTTGTCTCTCTCTCTCCTTCTCTCCTGATGCCCA
CAAGAAAGAAACCCTCTTCTTCTTCTTGATTTCTTCTATTTTTCATCCTG
TCTGTGAAGCAAACAGAGAGGAAAACAAGAAAGAATTAGAAGAAGAGGAG
ATACAACAGAGAGAAAGAGAAAGAAGAATTATAGTTAAGACTCTTATCAA
AGGTCAAAGCCCATCCCCCACCCCCAATGGACTCAGCATCGTCAGCCACA
GCTGCTGCTGCAATTTTTAATGAGAGAGAGTCAATGGTGGATCCATTTTT
GGTTGAGGCTCTCCAGAATCCTCGTCATCGTCTCACCATTCTGCGTATGG
AACTTGATATTCAGAGGTTTTTGCAAAATCCCGATCAGCAGCATTTCGAG
TTCCAACATTTTCCTACTTCTTATCTCCGACTGGCTGCACACCGTGTTTC
TCAACATTATGGGCTAGTAACTATGGTTCAGGAAAATGGCATAGAAGGGC
TGGGTAACAGGATTTTGGTGAGGAAAACAGCAGAAAGCAAATATCCTGCT
GTCCGTTTATCTGAGATTCCTGCTAAGCAGTCGGAAGAAAGTGATAAGCT
TGAAAAGATTAAAATTGCCATCAGGCGTAGGCCCAATGCTGGATGTGTTA
ATGGAGCAAATGAAACTGGGACGAAACGAAGTCCTGTTAGAAGTGTGGAA
GAGAGGAAGGAGGAGTATGATCGAGCACGTGCCCGCATCTTTAGTGGTCC
TAGCAGTCCTAACTCAGAGGATACGCTTACTCAGGTCTCTACAGATATGA
AAAATATTGGCTTTAACCGAGATGAGAGGGAAATTGTCAGGAACTCCATT
ACTGATGCAGAAAAGATTATTAGTA
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