CK938789

Overview
NameCK938789
Unique NameCK938789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938789 vs. ExPASy Swiss-Prot
Match: U497D_RICCO (UPF0497 membrane protein 13 OS=Ricinus communis GN=RCOM_1446020 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.796e-29
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 1
Query:  364 LLIRMEVTMVLLISGCAAASAIGYVGKYGELKMGWGAVCGFAPKFCNRSTISLVLSYLAFLCYMGLTILSAHKL 585
            L +   V MV+++SGC+AA+AIGYVG+YGE ++ W AVC F  KFCN++ +S+VL+YLA  CY+ LT L+AHKL
Sbjct:  115 LFLHDMVMMVMMVSGCSAATAIGYVGRYGEKEITWTAVCDFVGKFCNQALVSIVLAYLALFCYVALTTLAAHKL 188          

HSP 2 Score: 51.9878 bits (123), Expect = 6.796e-29
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  218 WPWSNKR-FFVAQITLRILATAFSLAAVSLMITSTQTVLVFLVQMKVTYSSSSAWR 382
            +P   KR FF+AQ+  RILA AF++A++S M+TS Q V+VF +     YS SSA+R
Sbjct:   23 YPSQPKRIFFMAQVIFRILAIAFAVASISAMVTSDQNVIVFGMDTAARYSYSSAFR 78          
BLAST of CK938789 vs. ExPASy Swiss-Prot
Match: U4971_POPTR (UPF0497 membrane protein 1 OS=Populus trichocarpa GN=POPTRDRAFT_824792 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.527e-15
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  355 YLQLLIRMEVTMVLLISGCAAASAIGYVGKYGELKMGWGAVCGFAPKFCNRSTISLVLSYLAFLCYMGLTILSAHK 582
            Y  L +     M L++ GCAAA+ +G++GK+G    GW  +C    KFCNR+  S+ +SYL  +C   LTI SA K
Sbjct:  100 YFFLFLHDLAMMSLVVGGCAAATTVGFLGKHGNSHTGWMQICDNFGKFCNRAQTSVTISYLNLICLSILTITSASK 175          

HSP 2 Score: 33.4982 bits (75), Expect = 3.527e-15
Identity = 22/62 (35.48%), Postives = 34/62 (54.84%), Query Frame = 2
Query:  197 AKYSSSSWPWSNKRFFVAQITLRILATAFSLAAVSLMITSTQTVLVFLVQMKVTYSSSSAWR 382
            AK+S +    + K F   QI  RI+A A S+A+  LMITS Q + +  + +   YS S  ++
Sbjct:    6 AKFSVNQPLKTQKLFIGVQIFFRIVAIAASVASSWLMITSKQVIDIGGIVLDARYSYSPEFK 67          
BLAST of CK938789 vs. ExPASy Swiss-Prot
Match: U497B_RICCO (UPF0497 membrane protein 11 OS=Ricinus communis GN=RCOM_1504680 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.427e-15
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  253 NYAQNFSHCFL---IGCSLSYDHQYSNCPC-LFGPDEGYLQLLIRMEVTMV-LLISGCAAASAIGYVGKYGELKMGWGAVCGFAPKFCNRSTISLVLSYLAFLCYMGLTILSAHK 582
            NY+  F    L   I C+ S       C    +  + G++ LL   ++ M+ L+++GC+AA+AIG++GKYG  K GW  +C    +FCNR TIS++LSYL+ +C + LT+ SA+K
Sbjct:   59 NYSSAFKFFVLANVIACACSVVSLLFLCALGRYSSNPGHVFLLFLHDLLMMSLVLAGCSAATAIGFLGKYGNTKSGWMPICDQFGQFCNRGTISMMLSYLSMVCLLILTVTSANK 173          
BLAST of CK938789 vs. ExPASy Swiss-Prot
Match: U4978_VITVI (UPF0497 membrane protein 8 OS=Vitis vinifera GN=GSVIVT00018013001 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.389e-13
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  388 MVLLISGCAAASAIGYVGKYGELKMGWGAVCGFAPKFCNRSTISLVLSYLAFLCYMGLTILSAHK 582
            M L+++GCAAA+AIGYVG+YG    GW A+C    ++CNR  +SL+ SYLAF+  + LTI+SA+K
Sbjct:  111 MSLVLAGCAAATAIGYVGRYGNNHAGWMAICDQFDEYCNRIRLSLMFSYLAFVFILMLTIMSANK 175          
BLAST of CK938789 vs. ExPASy Swiss-Prot
Match: U4977_VITVI (UPF0497 membrane protein 7 OS=Vitis vinifera GN=GSVIVT00037922001 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.389e-13
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  340 GPDEGYLQLLIRMEVTMVLLISGCAAASAIGYVGKYGELKMGWGAVCGFAPKFCNRSTISLVLSYLAFLCYMGLTILSAHKL 585
            G    Y  L     + MVL +S CAAA+A+GYVG+YG+ K  W AVCG    FC+++  S++LS + F+C   LTI++A  L
Sbjct:  101 GKSNHYFFLYFHDLILMVLSMSACAAATAVGYVGRYGQDKAAWMAVCGNVKMFCDKALASILLSLIGFICLFLLTIMAARNL 182          
BLAST of CK938789 vs. ExPASy Swiss-Prot
Match: U497U_ARATH (UPF0497 membrane protein At4g25040 OS=Arabidopsis thaliana GN=At4g25040 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.037e-13
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  382 VTMVLLISGCAAASAIGYVGKYGELKMGWGAVCGFAPKFCNRSTISLVLSYLAFLCYMGLTILSA 576
            +T +  IS  +AA A GYVGKYG  + GW  +CG+   +C+R TISL +S+ +F+    LT+L+A
Sbjct:  100 LTTLTAISAFSAAFAEGYVGKYGNKQAGWLPICGYVHGYCSRVTISLAMSFASFILLFILTVLTA 164          

HSP 2 Score: 32.7278 bits (73), Expect = 3.037e-13
Identity = 14/44 (31.82%), Postives = 29/44 (65.91%), Query Frame = 2
Query:  251 QITLRILATAFSLAAVSLMITSTQTVLVFLVQMKVTYSSSSAWR 382
            Q+++R+L    ++A++ +MIT+ +   V+ +  +  YS SSA+R
Sbjct:   18 QVSMRVLTIGAAMASMWVMITNREVASVYGIAFEAKYSYSSAFR 61          
The following BLAST results are available for this feature:
BLAST of CK938789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U497D_RICCO6.796e-2956.76UPF0497 membrane protein 13 OS=Ricinus communis GN... [more]
U4971_POPTR3.527e-1542.11UPF0497 membrane protein 1 OS=Populus trichocarpa ... [more]
U497B_RICCO7.427e-1539.13UPF0497 membrane protein 11 OS=Ricinus communis GN... [more]
U4978_VITVI2.389e-1353.85UPF0497 membrane protein 8 OS=Vitis vinifera GN=GS... [more]
U4977_VITVI2.389e-1343.90UPF0497 membrane protein 7 OS=Vitis vinifera GN=GS... [more]
U497U_ARATH3.037e-1344.62UPF0497 membrane protein At4g25040 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004438_C09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938789 ID=CK938789; Name=CK938789; organism=Citrus sinensis; type=EST; length=823bp
GGGGAATCAAATCAGATTTTCTCGTCTGATGGAGTTTGCCAGGTGCCCAT
AAACCCTTAGCTATTATTTATCAAGATTCTGGCGATTGGCCACCCCGTCC
CTTTTGCCCCCAGTTTCAGCTCTTGCGGTTGTTTTAGTTTTCTTTATTAT
TGGAACGGTCAGGAGGGTCTCTCTAATGGCAGTCGAAACAGCAGCTGCTA
AATATTCTTCTTCAAGTTGGCCCTGGTCCAACAAAAGATTCTTCGTGGCT
CAAATTACGCTCAGAATTTTAGCCACTGCTTTCTCATTGGCTGCAGTCTC
TCTTATGATCACCAGTACTCAAACTGTCCTTGTCTTTTTGGTCCAGATGA
AGGTTACTTACAGCTCCTCATCCGCATGGAGGTGACAATGGTGTTGCTGA
TATCAGGATGCGCGGCGGCGTCTGCAATTGGTTATGTAGGCAAGTATGGA
GAATTGAAGATGGGGTGGGGGGCTGTTTGTGGCTTTGCGCCCAAATTTTG
TAATAGATCGACGATTTCTCTTGTGTTATCTTACTTGGCTTTCCTCTGCT
ACATGGGACTCACAATTTTGTCTGCCCACAAGCTTATGTCTCGAGCTACC
GAATGAGAGAGTTATCAGAAAAGAGCAAGGAAACTTAGATAGATTCCATA
ATGTAGATGTAGATTGCAGAAGCACAATGGTGCAGTTTTATTTTGGTCTA
TCTTAATTTGCTGAGTTTCAGTTAGAAGTTTTTCATGCTAATTTCCAGCT
AATACCAGTTCTTAAGCTTTTATTAAGAGTCATTGTTGAGCCTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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