CN187875

Overview
NameCN187875
Unique NameCN187875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.597e-34
Identity = 84/200 (42.00%), Postives = 122/200 (61.00%), Query Frame = 3
Query:    6 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYD 587
            E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+  F  EN + L  +    +++LLKKPDQ RAV  C+HLFW     D++G  +  G+RV+ CLK+AL+IAN            S  V LF+EILN+Y+YF+EK N  +T   +  LI+ I  ++ + ES+      N  F +T  ++  +++   + G  Y+
Sbjct:  600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYE 792          
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.597e-34
Identity = 84/200 (42.00%), Postives = 122/200 (61.00%), Query Frame = 3
Query:    6 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYD 587
            E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+  F  EN + L  +    +++LLKKPDQ RAV  C+HLFW     D++G  +  G+RV+ CLK+AL+IAN            S  V LF+EILN+Y+YF+EK N  +T   +  LI+ I  ++ + ES+      N  F +T  ++  +++   + G  Y+
Sbjct:  600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYE 792          
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.136e-34
Identity = 84/200 (42.00%), Postives = 122/200 (61.00%), Query Frame = 3
Query:    6 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYD 587
            E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+  F  EN + L  +    +++LLKKPDQ RAV  C+HLFW     D++G  +  G+RV+ CLK+AL+IAN            S  V LF+EILN+Y+YF+EK N  +T   +  LI+ I  ++ + ES+      N  F +T  ++  +++   + G  Y+
Sbjct:  600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRSRRESPESEGPIYE 792          
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27
Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 3
Query:   15 AYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV----DDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS 482
            AYEFFTQAF +YEE + DS+ Q   + +IIG LQ+   F +++ DTL  K T Y+++LLKKPDQC  +Y  SHL+W     +D    +D +RVL CL+++L+IA+A        +       LF+ IL +Y Y++++    I A  I  LI+L    M+S
Sbjct:  575 AYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLTSLK-------LFINILERYFYYYDQHCESIIAKHISGLIDLTEQNMRS 727          
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 68/175 (38.86%), Postives = 108/175 (61.71%), Query Frame = 3
Query:    3 LEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRI-SVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFW------VDDQDGI-----KDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFF---EKGNTQITASAIQSLIELITSEMQS 482
            L  ++Y+FF+QAF ++EE ++DSK Q+ A+  I  +LQ+  S++     D+L  + T + ++LLKK DQCRAVY CSHL+W      + +++GI     +DG+RVL CL+R+LR+A++          +     L VEILN+ LY+F   ++  T I+   I  LIELI + ++S
Sbjct:  665 LNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMVEILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKS 832          
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 61/182 (33.52%), Postives = 100/182 (54.95%), Query Frame = 3
Query:   21 EFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQD-GIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKG 563
            E   +A ++++E+IAD KAQV A+ L+I TL  +S+   E  ++L  +    ++RLL   DQ + +  CSHLFWVD+     ++ + VL  LK+AL I         ++  SS  +  FV+ILN+ L++ +K    +    +  L+ELI +    E+   DPA   +  +T +YI+ Q  KG
Sbjct:  610 ELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI---------ISNESSPGLGTFVDILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEA---DPA-LPYLQNTIKYIQSQNYKG 778          
The following BLAST results are available for this feature:
BLAST of CN187875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS35_HUMAN3.597e-3442.00Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_BOVIN3.597e-3442.00Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_MOUSE6.136e-3442.00Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_SCHPO1.464e-2740.63Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_YEAST3.052e-2538.86Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_DICDI1.242e-1833.52Vacuolar sorting protein 35 OS=Dictyostelium disco... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187875 ID=CN187875; Name=CN187875; organism=Citrus sinensis; type=EST; length=753bp
CCCTCGAGCCTGTTGCCTATGAATTTTTCACTCAAGCATTTATGTTATAT
GAAGAAGAAATTGCGGACTCCAAAGCCCAGGTGACAGCAATACATCTGAT
AATTGGAACTCTACAGAGGATAAGTGTATTTGGTATTGAGAATAGGGATA
CTTTGACACACAAGGCCACTGGGTATTCTGCAAGGCTTTTAAAGAAACCC
GATCAGTGCCGAGCAGTTTATGCATGCTCACATCTCTTTTGGGTTGATGA
TCAAGATGGTATTAAGGACGGAGAAAGGGTCCTCCTATGCCTAAAGCGTG
CCTTGAGGATTGCGAATGCTGCTCAACAAATGGCCAATGTTGCACGGGGT
AGCAGCGGGCCTGTAGTTCTCTTTGTTGAAATACTTAACAAGTACCTCTA
TTTTTTTGAGAAAGGAAACACACAGATCACAGCTTCAGCAATACAAAGCC
TCATTGAGTTAATCACTAGTGAGATGCAGAGTGAGTCCACAACCCTAGAT
CCTGCTGATAATGCTTTCTTTGCGAGCACGAAACGGTACATTGAATTCCA
GAAAAAGAAAGGTGGTGCAATGGGTGAGAAATATGATCCCATCAATGTGT
GACTTTTTTGAGCTCGATACAGAAAACTTCTCGGAAAAGTAAATACAGAA
CCCAACCCCCCCCCCCCCCCCCCCAAGTGTCAAAGTCTTAGATTCATTAT
TTTCATGTCACAAATGAAAAAGAAAATTGATTTCTTCTGTTTAAGGGTTT
TAT
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