CN187875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 3.597e-34 Identity = 84/200 (42.00%), Postives = 122/200 (61.00%), Query Frame = 3 Query: 6 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYD 587 E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+ F EN + L + +++LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +T ++ +++ + G Y+ Sbjct: 600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYE 792
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.597e-34 Identity = 84/200 (42.00%), Postives = 122/200 (61.00%), Query Frame = 3 Query: 6 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYD 587 E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+ F EN + L + +++LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +T ++ +++ + G Y+ Sbjct: 600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYE 792
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 6.136e-34 Identity = 84/200 (42.00%), Postives = 122/200 (61.00%), Query Frame = 3 Query: 6 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYD 587 E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+ F EN + L + +++LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +T ++ +++ + G Y+ Sbjct: 600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRSRRESPESEGPIYE 792
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27 Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 3 Query: 15 AYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV----DDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS 482 AYEFFTQAF +YEE + DS+ Q + +IIG LQ+ F +++ DTL K T Y+++LLKKPDQC +Y SHL+W +D +D +RVL CL+++L+IA+A + LF+ IL +Y Y++++ I A I LI+L M+S Sbjct: 575 AYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLTSLK-------LFINILERYFYYYDQHCESIIAKHISGLIDLTEQNMRS 727
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25 Identity = 68/175 (38.86%), Postives = 108/175 (61.71%), Query Frame = 3 Query: 3 LEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRI-SVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFW------VDDQDGI-----KDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFF---EKGNTQITASAIQSLIELITSEMQS 482 L ++Y+FF+QAF ++EE ++DSK Q+ A+ I +LQ+ S++ D+L + T + ++LLKK DQCRAVY CSHL+W + +++GI +DG+RVL CL+R+LR+A++ + L VEILN+ LY+F ++ T I+ I LIELI + ++S Sbjct: 665 LNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMVEILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKS 832
BLAST of CN187875 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18 Identity = 61/182 (33.52%), Postives = 100/182 (54.95%), Query Frame = 3 Query: 21 EFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQD-GIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKG 563 E +A ++++E+IAD KAQV A+ L+I TL +S+ E ++L + ++RLL DQ + + CSHLFWVD+ ++ + VL LK+AL I ++ SS + FV+ILN+ L++ +K + + L+ELI + E+ DPA + +T +YI+ Q KG Sbjct: 610 ELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI---------ISNESSPGLGTFVDILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEA---DPA-LPYLQNTIKYIQSQNYKG 778 The following BLAST results are available for this feature:
BLAST of CN187875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN187875 ID=CN187875; Name=CN187875; organism=Citrus sinensis; type=EST; length=753bpback to top |