CN187872

Overview
NameCN187872
Unique NameCN187872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13 contig Csv1_Contig13:894..1734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187872 vs. ExPASy Swiss-Prot
Match: PFPA_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.957e-103
Identity = 174/203 (85.71%), Postives = 194/203 (95.57%), Query Frame = -2
Query:  232 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSAS 840
            MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYH+LAAGLNGYMAT TNLKNP NKWRCGAAPI +MMTVKRW+QNPGA+SIG+PAI+PA VD++GKAYELLR NA +FL+DDLYRNPGP+QF+GPGADAK +TLCVED+DYMGRIK+LQ+YLD+VRTIVKPGCSQEVLKAALSVMASVT+VL  MS++
Sbjct:  407 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHVLAAGLNGYMATATNLKNPVNKWRCGAAPIAAMMTVKRWAQNPGATSIGKPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYRNPGPLQFEGPGADAKPITLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLLTMSST 609          
BLAST of CN187872 vs. ExPASy Swiss-Prot
Match: PFPA_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 9.406e-98
Identity = 166/208 (79.81%), Postives = 192/208 (92.31%), Query Frame = -2
Query:  217 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVEDRDYMGRIKELQKYLDEVRTIVKPGCSQEVLKAALSVMASVTEVLSAMSASGGQTT 840
            MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGH+CYHILAAGLNGYMAT+TNLKNPANKW CGA+PI++MMTVKR+ + PG +SIG PA++PATVD+RGK+YELL QNAT+FLLDD+YRNPGP+QFDGPGADAKA +L VED DY+G IK+LQ+YLD+VRTIVKPGCSQ+VLKAALS MASVT++LS +S+    +T
Sbjct:  407 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATITNLKNPANKWHCGASPISAMMTVKRYGRGPGKASIGVPALHPATVDLRGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGSLVVEDADYIGAIKKLQEYLDKVRTIVKPGCSQDVLKAALSAMASVTDILSVISSPSSVST 614          
BLAST of CN187872 vs. ExPASy Swiss-Prot
Match: PFPB_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = -2
Query:  385 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVE 840
            + KR ++GTYK   F    HFFGY+ R  LP+ FD  Y Y LG+    +L +G  G +++V NL  P  +W  G   +TS+M V+R           +P I  A V++ G  ++        + L + Y +PGP+QF GPG+DA + TL +E
Sbjct:  403 LEKRKQQGTYKAH-FKGQSHFFGYEGRCGLPTNFDSTYCYALGYAAGALLHSGKTGLISSVGNLGAPVAEWTVGGTALTSLMDVER------RHGKFKPVIKKAMVELEGAPFKKFASLREEWALKNRYVSPGPIQFMGPGSDAASHTLLLE 547          
BLAST of CN187872 vs. ExPASy Swiss-Prot
Match: PFPB_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17
Identity = 50/152 (32.89%), Postives = 79/152 (51.97%), Query Frame = -2
Query:  385 MNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKNPANKWRCGAAPITSMMTVKRWSQNPGASSIGRPAINPATVDMRGKAYELLRQNATRFLLDDLYRNPGPVQFDGPGADAKAVTLCVE 840
            +++R ++G Y  + F    HFFGY+ R  LPS FD  Y Y LG+    +L +G  G +++V NL  P  +   G   +T++M V+R           +P I  A V++ G  ++        + L++ Y NPGP+QF GP A+    TL +E
Sbjct:  403 LDQRKQKGAYNAQ-FKGQFHFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEELTVGGTALTALMDVER------RHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLE 547          
The following BLAST results are available for this feature:
BLAST of CN187872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PFPA_RICCO1.957e-10385.71Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPA_SOLTU9.406e-9879.81Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPB_RICCO4.176e-2136.18Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPB_SOLTU3.658e-1732.89Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187872 ID=CN187872; Name=CN187872; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTCAAAACTTGCAATGCATACCTCTCTAGTTATTATCTATA
TCGGACAAAAATGTAACACTGGATAGAATAACAAAAGAGAATGAACTCAA
TTCATTACTACCAATACACAGTAAATGGCTTGGCAAAAGAAGAAGAAAGC
AAGCATAATCAGCTAAGTTGTCTTAAAGAAGAAAGCAAAGCATAATCAGC
CAACTTCGTCTTAAAGTGTTGTCTGGCCTCCAGATGCAGACATTGCTGAG
AGAACTTCCGTCACAGAAGCCATAACACTCAAAGCTGCTTTCAGTACCTC
TTGTGAACAACCTGGTTTCACTATGGTTCGAACCTCGTCTAGATACTTCT
GCAGTTCCTTAATACGGCCCATGTAATCCCGGTCTTCAACACACAGAGTT
ACAGCCTTAGCATCTGCACCAGGACCATCAAACTGAACGGGTCCAGGATT
TCTGTAGAGGTCGTCCAACAAGAATCTTGTTGCATTTTGTCTCAAGAGCT
CATAAGCTTTGCCTCTCATATCCACAGTAGCGGGGTTAATAGCCGGTCGT
CCAATTGAAGAAGCACCCGGATTTTGAGACCAACGTTTTACAGTCATCAT
TGATGTAATTGGAGCAGCACCACAACGCCACTTGTTCGCAGGATTCTTAA
GATTAGTCACAGTAGCCATGTAACCATTCAAACCAGCAGCAAGAATATGG
TAGCAGATGTGTCCAAGAACGTAGGCATAGTCACAGTCGAATTTCGATGG
CAATGATCCACGAGCCTGATAACCGAAAAAGTGGCAGATTGCATTGAACT
TTTTACCCTTGTACGTGCCCTCTTTCAGGCGCTTGTTCATT
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