CK938765

Overview
NameCK938765
Unique NameCK938765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938765_ssr5 microsatellite CK938765_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.602e-58
Identity = 136/244 (55.74%), Postives = 161/244 (65.98%), Query Frame = 2
Query:  125 MDPPLVNEXXXXXXXXXXXXLAEIWPFPINNGGAGDAGLRMG-NMGHGF--GESSALRDGSMGE-STVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGS---KAEVEASSAAG-NXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVNSRMNLTPTIEGFHPKDLG 832
            MDPPLVN+            L+EIWPFP+N+  A  +GLR+  N G  F   E S  +D S  E STVT+ + G   RK RDL+SED+SSK+VS++SS N+L +S  K  K  GS++ NG    + E E SS  G +             DYIHVRARRGQATD HSLAERARREKISE+M  LQD++PGCNK+IGKALVLDEIINYIQSLQRQVE LSMKLE VNS  +  PTI  F   DLG
Sbjct:    1 MDPPLVNDSSFSAANPSSYTLSEIWPFPVND--AVRSGLRLAVNSGRVFTRSEHSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNELKESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLG 242          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.014e-44
Identity = 119/224 (53.12%), Postives = 136/224 (60.71%), Query Frame = 2
Query:  185 LAEIWPFPINN-GGAGDAGLRMGNMGHGFGESSALRDGSMGE--------STVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVNSRMNLTPTIEGFHPKDL 829
            LAEIW FP+N    AGD+  R     + FG++  L   + G+        S    +   G  ++R D   E +S+KIVST  ++   N       K          KAE E+    G              DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE LSMKLEAVNSRMN  P IE F PK++
Sbjct:   15 LAEIWQFPLNGVSTAGDSSRRSFVGPNQFGDAD-LTTAANGDPARMSHALSQAVIEGISGAWKRRED---ESKSAKIVSTIGASEGEN-------KRQKIDEVCDGKAEAES---LGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN--PGIEVFPPKEV 222          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.615e-36
Identity = 96/197 (48.73%), Postives = 116/197 (58.88%), Query Frame = 2
Query:  200 PFPINNGGAGDAGLRMGNMGHGFGESSALRDGSMGESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVNSRMN 790
            PFPINN        +M  +      SS+     +       +S G   RKR+  S ++  S  VS++    +  DS+ K  K S    ENG K +                      DYIHVRARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVE LSMKL +VN+R++
Sbjct:  163 PFPINNEPPITTNEKMPRV------SSSPVFKPLASHVPAGESSGELSRKRKTKSKQNSPSA-VSSSKEIEEKEDSDPKRCKKS---EENGDKTK----------------SIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLD 333          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.137e-34
Identity = 93/181 (51.38%), Postives = 111/181 (61.33%), Query Frame = 2
Query:  272 ESSALRDGSMGESTVTEQSGGGCGRKRRDLSSED--ESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAG-------NXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVNSRM 787
            +SS L   S+ +   T +S     RKR+ + S +  ES    S T+S + ++  NG      GSK    SK +V  SS  G                     DYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCN++ GKA++LDEIINY+QSLQRQVE LSMKL  VN RM
Sbjct:   94 KSSLLDPDSVSDRVHTTKSNS---RKRKSIPSGNGKESPASSSLTASNSKVSGENG------GSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM 265          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.320e-34
Identity = 95/202 (47.03%), Postives = 114/202 (56.44%), Query Frame = 2
Query:  206 PINNGGAGDAGLRMGNMGHGFGESSALRDGSMGESTVTEQ--SGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKN--ENGSKA-------EVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVN 778
            PINNG          NM +  G+ + +      ++ V+ +   GG   RKR+ +         +ST S +   + +  K     GSK+  E G K        E E     GN             DYIHVRARRGQATDSHSLAER RREKI ERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVE LSMKL +VN
Sbjct:  181 PINNGN---------NMVNNSGKLTRVSSTPALKALVSPEVTPGGEFSRKRKSVPKGKSKENPISTASPSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDEEEEGEGEGNKSNNTKPPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVN 372          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.657e-33
Identity = 93/194 (47.94%), Postives = 112/194 (57.73%), Query Frame = 2
Query:  293 GSMGESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSS----------ANDLNDSNGKWMKT------SGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVNSRMNLTPTIEGFHPKD 826
            G++ E T   QS GG G+K R+ SS  +  K     +S          + +  D+NG   +       S  K  N  K + + SS                  YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV GKA++LDEIINY+QSLQRQVE LSMKL  VN +M+    +EG   KD
Sbjct:  212 GNVSEDT---QSSGGNGQKGRETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSS------------DPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDF--NLEGLLAKD 388          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.064e-32
Identity = 88/193 (45.60%), Postives = 117/193 (60.62%), Query Frame = 2
Query:  233 AGLRMGNMGHGFGESSALRDGSMGESTVTEQSGGGCGRKRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGS---------KAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVNSR 784
            AGL +  M   +GE++   D  +  S  T    G   +++ D  ++D + K    T + +DL +  G+  K+  ++  NGS         KA+ E ++ + +             DYIHVRARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+ GKA +LDEIINY+QSLQRQ+E LSMKL  VN R
Sbjct:   59 AGLNLPMM---YGETTVEGDSRLSISPETTLGTGNFKKRKFDTETKDCNEKKKKMTMNRDDLVEE-GEEEKSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKT--DYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR 245          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.455e-30
Identity = 82/171 (47.95%), Postives = 98/171 (57.31%), Query Frame = 2
Query:  275 SSALRDGSMGESTVTEQSGGGCGR---KRRDLSSEDESSKIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVN 778
            S  +++ S+   +   QS GG G    K    SS+  SSK         D  +   K  K   S   N +K   E   +                 YIH+RARRGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q+E LSMKL AVN
Sbjct:  137 SKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSK--KRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPSDS-----------LKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVN 294          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.438e-29
Identity = 92/215 (42.79%), Postives = 119/215 (55.35%), Query Frame = 2
Query:  206 PINNGGAGDAGLRMGNMGHG-----FGESSALRDGSMGESTVTEQSGGGCGRKRRDLSSEDESSK--IVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVNSRMNLTPTIEGFHPKDL 829
            P  + G G  G  +G+   G      GESS      + +  V   S  G   KRR   +E + +K  +          ND + K  K   SK E  +K   ++  A                +YIH+RARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA++LDEIINY+QSLQ+QVE LSMKL  VN  +N+   I+    KDL
Sbjct:   97 PFGDCGGGQIGHFLGSDKKGERLIRAGESSHEDHHQVSDDAVLGASPVG---KRRLPEAESQWNKKAVEEFQEDPQRGNDQSQKKHKNDQSK-ETVNKESSQSEEAPKE-------------NYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINI--DIDRILAKDL 292          
BLAST of CK938765 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.184e-29
Identity = 82/177 (46.33%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  266 FGESSALRDGSMGESTV-TEQSGGGCGRKRRDLSSEDESS-KIVSTTSSANDLNDSNGKWMKTSGSKNENGSKAEVEASSAAGNXXXXXXXXXXXXXDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVESLSMKLEAVNSRMN 790
            F  +S L D +   S + TEQ+G   G     L S   ++   V    +  D    N     +SG + E   K +   SS   N              Y+HVRARRGQATD+HSLAERARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEIIN++Q+LQRQVE LSM+L AVN R++
Sbjct:   91 FPSNSLLLDRAARFSVIATEQNGNFSGETANSLPSNPGANLDRVKAEPAETDSMVENQNQSYSSGKRKEREKKVK---SSTKKNKSSVESDKLP----YVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVEMLSMRLAAVNPRID 260          
The following BLAST results are available for this feature:
BLAST of CK938765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
BH079_ARATH5.602e-5855.74Transcription factor bHLH79 OS=Arabidopsis thalian... [more]
BPE_ARATH6.014e-4453.13Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH062_ARATH4.615e-3648.73Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH077_ARATH1.137e-3451.38Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH078_ARATH4.320e-3447.03Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH049_ARATH3.657e-3347.94Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH063_ARATH1.064e-3245.60Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH076_ARATH6.455e-3047.95Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH074_ARATH1.438e-2942.79Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH048_ARATH4.184e-2946.33Transcription factor bHLH48 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_E04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938765 ID=CK938765; Name=CK938765; organism=Citrus sinensis; type=EST; length=839bp
GGGGACTCACTCACTCGCTCACAAACTCTCCAAAATCCAAACTTTCTCTC
ATCTACCAGGGGCCTCGAGTGCCTGGATCCGAATCCCAATCCGCCTTTTT
AATGTACCCACCCGGGTCACTAAAATGGATCCTCCGCTTGTAAACGAGTC
TTCCTTCTCTGCTGCCAACCCTTCATCCTACAGTTTGGCAGAGATTTGGC
CTTTTCCAATCAACAATGGCGGTGCCGGTGATGCCGGTCTTCGAATGGGG
AATATGGGTCATGGGTTCGGGGAAAGTTCGGCTCTCAGAGATGGGTCGAT
GGGGGAATCAACAGTGACTGAGCAGAGTGGTGGTGGGTGTGGCAGAAAGA
GAAGGGATTTGAGCTCTGAAGATGAATCTTCTAAGATTGTTTCTACTACT
AGTAGTGCCAATGACTTGAATGATTCAAATGGTAAATGGATGAAAACATC
GGGATCAAAAAATGAAAATGGTTCAAAAGCTGAAGTGGAAGCAAGTTCTG
CAGCTGGTAACAAGCCAGCTGAAAGTAGTAAACCCTCTGAGCCACCTAAA
GACTATATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGATAGCCATAG
TTTAGCAGAGAGAGCTAGACGAGAAAAAATTAGCGAGAGGATGAAGATTC
TGCAGGATCTGGTCCCTGGATGCAATAAGGTTATTGGAAAAGCTCTTGTT
CTCGATGAAATAATTAATTACATTCAGTCACTACAACGGCAGGTTGAGTC
CCTGTCAATGAAGTTAGAAGCTGTTAATTCAAGGATGAACTTGACTCCTA
CCATTGAAGGGTTTCATCCAAAAGATCTTGGTGAACAGG
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