CN187857

Overview
NameCN187857
Unique NameCN187857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9235 contig Csv1_Contig9235:52..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 67/168 (39.88%), Postives = 95/168 (56.55%), Query Frame = 1
Query:  229 CLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            C+ RYL A  W+V  AKK + +TL WR  +    +  +EI  E  TGK    G+ D+ GR  L L P  QNT +   Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E +NILQ HY ERL  A + N P     F+K++  F+D  T +K+KF
Sbjct:  637 CILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPDEIQEENATGKQVLLGY-DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKF 803          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.177e-23
Identity = 59/196 (30.10%), Postives = 113/196 (57.65%), Query Frame = 1
Query:  166 KELKAAIGPLYGRS-LQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIR-WNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQM--RHLVYLIENAI--LNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKFV 735
            KE+K+    L   + + +C+D C  RYL ARN+ V K++KML +TL+WR  +RP++I+   +I   G  G ++     D+ GR ++   P      ++ +++  ++LVY +E     ++ P+G EQ  +++D+  +  S ++ +++  E ++ L +H PER+  +   +PP +F   WK++  FL+  T  KV+F+
Sbjct:   53 KEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKFRPQDIQLGGDIREIGSAGCVY-VNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFI 246          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.376e-22
Identity = 70/185 (37.84%), Postives = 97/185 (52.43%), Query Frame = 1
Query:  214 YCSDACLKRYLEARNWNVDKAKKMLEETLKWRS----TYRPEE---IRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWS-----LSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            + S  C  RYL A  WN   A K L +TL WR     T+  E+   +  +++AVE ETGK    GF D   R +  ++ G QNT S   Q++ LVY++E A    P+G E++  L+DF  +         + PI  AR  +N++Q+HYPERLA   L N P    AF K++  FLD  T  K  F
Sbjct:   89 WLSRECFLRYLRANKWNTANAIKGLTKTLVWRREIGLTHGKEDKDPLTADKVAVENETGKQVILGF-DNAKRPLYYMKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLDPATKAKAIF 272          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 66/196 (33.67%), Postives = 99/196 (50.51%), Query Frame = 1
Query:  190 PLYGRSLQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTY--------RPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGW-------SLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            PL      + +  C  RYL A  W +      +  TL WR  +          ++I  + +AVE E+GK    G+ +   R +L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A LIDF  +         S   PI   +E ++ILQ HYPERL  A L N P +   F K++  F+D  T +K+ F
Sbjct:   76 PLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGY-ENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVF 270          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: CSR1_ASHGO (Phosphatidylinositol transfer protein CSR1 OS=Ashbya gossypii GN=CSR1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 57/206 (27.67%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  163 VKELKAAIGPLYGRSLQYCS--DACLKRYLEARNWNVDKAKKMLEETLKWR-STYRPEEIRWNE-----------IAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQ--MRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            +KEL  A       S+  C   D  L R++ AR W+++KA  M+  +L+WR +  +PE+I +             I  + E GK    GF D++G  ++ +RP + + A         + +++IE A L L E  +    L D +G+S++ ++     +  I   + HYPE L   F++  P IF   W +++ +LD     K+ F
Sbjct:  116 LKELDGAAVSKEFWSMLRCDYPDNLLLRFVRARKWDINKAMIMMAHSLRWRLNEGKPEDIVFGGERGAQKADKKGIVKQLELGKATVRGF-DKNGCPIVYVRPRLHHAADQTEAETSEYSLFIIEQARLFLKEPCDTATILFDLSGFSMA-NMDYAPVKFLITCFEAHYPECLGKLFIHKAPWIFPPIWNIIKNWLDPVVAAKIAF 319          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: YAS2_SCHPO (CRAL-TRIO domain-containing protein C3H8.02 OS=Schizosaccharomyces pombe GN=SPAC3H8.02 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 53/185 (28.65%), Postives = 83/185 (44.86%), Query Frame = 1
Query:  223 DACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGE-------------TGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQM--RHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            D  L R+L AR WNV+ A +M  +T+ WRS     E+   EI    +              GK F  G  D+H R V  +R  +     +  +   R  V+++E A L L    E    + D T +S+S ++     +  I   + HYPE L    ++  P +F+  W +++ +LD     KVKF
Sbjct:  124 DGLLLRFLRARKWNVEAALEMFMKTVHWRS----REMNVGEIVCNADHLDKDDDFVRQLRIGKCFIFG-EDKHNRPVCYIRARLHKVGDVSPESVERLTVWVMETARLILKPPIETATVVFDMTDFSMS-NMDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSWLDPVVVSKVKF 302          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: RETM_ANOGA (Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 51/184 (27.72%), Postives = 86/184 (46.74%), Query Frame = 1
Query:  232 LKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGF--HDRHGRTVLILRPGMQNTASI------DNQMRHLVYLIENAILNLPE-----GQEQMAW--LIDFTGWSLS--TSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            L R+L AR++++DKA  ML+E+L+WR   R + I   E        K F  G+  HD+ GR + ILR G  +   +      D  ++  +++ E  +  + E     G+    W  L+D  G S+       +++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F
Sbjct:  258 LLRFLRARDFSIDKATGMLQESLQWRKEQRIDSI-LGEYKTPAVVEKYFPGGWHHHDKDGRPLYILRLGTMDVKGLLKSVGEDELLKLTLHICEEGLRLMKEATKLFGKPVWNWCLLVDLDGLSMRHLWRPGVKALLRIIETVETNYPETMGRVLIVRAPRVFPVLWTIVSTFIDENTRSKFLF 440          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: RETM_AEDAE (Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 1
Query:  232 LKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGF--HDRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPE-----GQEQMAW--LIDFTGWSLS--TSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            L R+L AR+++++KA  ML+E+L+WR  +R ++I   E        K F  G+  HD+ GR + ILR       G+  +   D  ++  +++ E  +  + E     G+    W  L+D  G S+       +++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F
Sbjct:  255 LLRFLRARDFSIEKAASMLQESLQWREEHRIDDI-LGEYKTPVVVEKYFPGGWHHHDKDGRPLYILRLGNMDVKGLLKSVGEDELLKLTLHICEEGLKLMKEATKLFGKPIWNWCLLVDLDGLSMRHLWRPGVKALLRIIETVEKNYPETMGRVLIVRAPRVFPVLWTIVSAFIDENTRSKFLF 437          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: RETM_DROME (Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 53/184 (28.80%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  238 RYLEARNWNVDKAKKMLEETLKWRSTYRPEEI--RWNEIAVEGETGKLFRAGFH--DRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMA-----W--LIDFTGWSLST--SVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            R+L AR+W+V +A  ML ++L+WR  +R + +   +++ AV  E    F  G+H  D+ GR V ILR       G+  +  +D  +R  +++ E  I  + E  E++      W  L+D  G S+       I++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F
Sbjct:  249 RFLAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAVVVEH---FPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAERLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLF 429          
BLAST of CN187857 vs. ExPASy Swiss-Prot
Match: RETM_DROPS (Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 51/184 (27.72%), Postives = 89/184 (48.37%), Query Frame = 1
Query:  238 RYLEARNWNVDKAKKMLEETLKWRSTYRPEEI--RWNEIAVEGETGKLFRAGFH--DRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPEGQEQM-------AWLIDFTGWSLST--SVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVQYFLDAKTFQKVKF 732
            R+L AR+W+V +A  ML ++L+WR  +R + +   + E AV  E    F  G+H  D+ GR + ILR       G+  +  ++  +R  +++ E  I  + E  E++       + L+D  G S+       I++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F
Sbjct:  247 RFLSARDWHVSQAFAMLCDSLQWRKEHRMDSLLEEYTEPAVVVEH---FPGGWHHHDKDGRPIYILRLGHMDVKGLLKSLGMEGLLRLALHICEEGIQKINESAERLDKPVLNWSLLVDLEGLSMRHLWRPGIKALLYIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLF 427          
The following BLAST results are available for this feature:
BLAST of CN187857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YJX4_SCHPO7.796e-2639.88CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
RSC5_DICDI6.177e-2330.10Random slug protein 5 OS=Dictyostelium discoideum ... [more]
PDR17_YEAST1.376e-2237.84Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
PDR16_YEAST2.347e-2233.67Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
CSR1_ASHGO5.795e-1327.67Phosphatidylinositol transfer protein CSR1 OS=Ashb... [more]
YAS2_SCHPO9.885e-1328.65CRAL-TRIO domain-containing protein C3H8.02 OS=Sch... [more]
RETM_ANOGA9.885e-1327.72Protein real-time OS=Anopheles gambiae GN=retm PE=... [more]
RETM_AEDAE1.686e-1227.17Protein real-time OS=Aedes aegypti GN=retm PE=3 SV... [more]
RETM_DROME4.906e-1228.80Protein real-time OS=Drosophila melanogaster GN=re... [more]
RETM_DROPS8.368e-1227.72Protein real-time OS=Drosophila pseudoobscura pseu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187857 ID=CN187857; Name=CN187857; organism=Citrus sinensis; type=EST; length=738bp
AGGCTCCATCTTCCTCAAAATCAGATTCATAGACAAAGCATTACCACGGT
GTTTCTATCTCCTTCTCCAGGTTGACTCGATTGCTAAATTGTGGGATCAG
TTGCCATGTTTCGCAAGAAGAATAACACTCAGGAGAGTGAGGAGCACCAT
CATGAGTCAAAGGTCAAGGAGCTTAAGGCTGCGATCGGACCACTTTATGG
ACGTAGTTTGCAGTATTGCTCTGATGCATGCTTGAAGAGATATCTGGAGG
CTCGAAACTGGAATGTGGACAAAGCAAAGAAAATGTTGGAAGAGACACTC
AAATGGAGGTCAACCTACAGGCCGGAGGAAATCCGTTGGAATGAAATTGC
AGTTGAAGGTGAGACCGGAAAGTTATTTAGAGCTGGTTTTCATGACCGAC
ATGGCAGGACTGTTCTCATATTGAGACCCGGAATGCAGAACACTGCATCA
ATAGACAATCAGATGAGACACCTAGTCTATCTCATAGAGAATGCTATCCT
AAACCTTCCAGAGGGTCAGGAACAAATGGCATGGTTAATAGACTTCACTG
GGTGGTCATTGAGCACCAGCGTCCCTATCAGGTCTGCTCGAGAAACTATC
AATATATTACAAAATCACTACCCTGAAAGGCTGGCCATAGCATTTCTCTA
CAATCCCCCACGGATTTTTGAAGCATTTTGGAAGGTTGTNCAGTATTTCT
TGGATGCCAAAACATTCCAAAAGGTGAAATTTGTATAT
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