CN187856

Overview
NameCN187856
Unique NameCN187856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:297..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 1.139e-107
Identity = 186/213 (87.32%), Postives = 204/213 (95.77%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            VSKS++KC+TVGIQGIAW+FGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FY+VMQCLGA+CGAGVVKGF+    Y   GGGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKDHAW+DHWIFWVGPF+GAALAA+YHQ++IRAIPFKSR+
Sbjct:   78 VSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGL-YMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKSRS 289          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 389.037 bits (998), Expect = 1.487e-107
Identity = 187/213 (87.79%), Postives = 202/213 (94.84%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            V+ S +KC+TVGIQGIAW+FGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FYMVMQCLGA+CGAGVVKGF+    YE  GGGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+N+ HAWDDHWIFWVGPFIGAALAA+YHQ+VIRAIPFKSR+
Sbjct:   77 VNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGL-YETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKSRS 288          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 5.651e-107
Identity = 185/213 (86.85%), Postives = 202/213 (94.84%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            VSKS +KC+TVGIQGIAW+FGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FY++MQCLGA+CGAGVVKGF+    Y   GGGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+N+DHAW DHWIFWVGPFIGAALAA+YHQ++IRAIPFKSR+
Sbjct:   81 VSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGL-YMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKSRS 292          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 5.651e-107
Identity = 187/213 (87.79%), Postives = 202/213 (94.84%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            V ++   C++VGIQGIAWAFGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRAVFY+VMQCLGA+CGAGVVKGF+ +  Y+ LGGGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKDHAWDDHWIFWVGPFIGAALAA+YHQ+VIRAIPFKSR+
Sbjct:   75 VKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNP-YQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKSRS 286          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 5.651e-107
Identity = 186/213 (87.32%), Postives = 203/213 (95.31%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            VSKS +KC+TVGIQGIAW+FGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FY++MQCLGAVCGAGVVKGF+    Y   GGGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+N+DHAW+DHWIFWVGPFIGAALAA+YHQ++IRAIPFKSR+
Sbjct:   78 VSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGL-YMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKSRS 289          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 5.651e-107
Identity = 187/213 (87.79%), Postives = 201/213 (94.37%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            V +S   C++VGIQGIAWAFGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRAV+Y+VMQCLGA+CGAGVVKGF+  K Y+ LGGGAN +AHGYTKG GLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKD+AWDDHW+FWVGPFIGAALAA+YH IVIRAIPFKSR+
Sbjct:   75 VKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKSRS 286          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 7.380e-107
Identity = 186/213 (87.32%), Postives = 202/213 (94.84%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            V ++   C++VGIQGIAWAFGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRAVFYM+MQCLGA+CGAGVVKGF+ +  Y+ LGGGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKDH+WDDHWIFWVGPFIGAALAA+YHQIVIRAIPFKS++
Sbjct:   76 VKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTP-YQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSKS 287          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 9.639e-107
Identity = 185/213 (86.85%), Postives = 201/213 (94.37%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            V +S   C++VGIQGIAWAFGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA++Y+VMQCLGA+CGAGVVKGF+  K Y+ LGGGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKDH+WDDHW+FWVGPFIGAALAA+YH +VIRAIPFKSR+
Sbjct:   75 VKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKSRS 286          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 9.639e-107
Identity = 185/213 (86.85%), Postives = 201/213 (94.37%), Query Frame = -3
Query:  135 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 773
            V +S   C++VGIQGIAWAFGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA++Y+VMQCLGA+CGAGVVKGF+  K Y+ LGGGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKDH+WDDHW+FWVGPFIGAALAA+YH +VIRAIPFKSR+
Sbjct:   75 VKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKSRS 286          
BLAST of CN187856 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 382.874 bits (982), Expect = 1.066e-105
Identity = 185/212 (87.26%), Postives = 200/212 (94.34%), Query Frame = -3
Query:  138 VSKSNTKCSTVGIQGIAWAFGGMIYALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSR 773
            V ++   C++VGIQGIAWAFGGMI+ALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FY+VMQCLGA+CGAGVVKGF+    Y+  GGGANVVAHGYTKG GLGAEI+GTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKDHAWDDHWIFWVGPFIGAALAA+YHQIVIRAIPFKS+
Sbjct:   76 VKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGL-YQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 286          
The following BLAST results are available for this feature:
BLAST of CN187856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
PIP11_ORYSJ1.139e-10787.32Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_ORYSJ1.487e-10787.79Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP13_MAIZE5.651e-10786.85Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP13_ARATH5.651e-10787.79Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_MAIZE5.651e-10787.32Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP12_ARATH5.651e-10787.79Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP14_ARATH7.380e-10787.32Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_VICFA9.639e-10786.85Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH9.639e-10786.85Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP15_ARATH1.066e-10587.26Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187856 ID=CN187856; Name=CN187856; organism=Citrus sinensis; type=EST; length=775bp
TTTACGCAATGCTNATAATTTACACACAATTAATTAACATCTTAAACAGT
CTATCACCAAATGCACATAAACAAAAAGACACGACAAAGAAGATACAAAT
TAAAAAAAAAAAGGTCCATCAGTGAACTCTCTTAAGCCCTGGACTTGAAG
GGAATGGCCCTGATGACTATCTGGTGGTACACAGCAGCCAGTGCAGCTCC
AATGAATGGTCCAACCCAGAAGATCCAATGGTCATCCCAGGCATGGTCTT
TGTTGAAGATGATGGCAGCTCCAAGACTCCTAGCTGGGTTGATGCCAGTT
CCTGTGATGGGGATGGTGGCCAGGTGGACCAAGAAAACAGCAAATCCAAT
GGGGAGGGGGGCCAAAATAGGGACATGAGAGTCTCTGGCGTTTCTCTTCG
CATCAGTGGCAGAGAAGACAGTGTAAACAAGAACAAAGGTTCCAATAATC
TCAGCACCAAGACCATCACCCTTGGTGTAGCCGTGAGCAACAACATTGGC
TCCACCACCCAACCTCTCGTAGTTCTTTGAACCTTCGAATCCCTTGACAA
CACCAGCACCACAGACAGCACCAAGGCACTGCATGACCATGTAGAAGACA
GCCCTTGTCAGGGAAAGCTTCCTCGCTAGCAGCAGACCGAAGGTCACTGC
TGGGTTGATGTGTCCTCCTGAGATACCAGCAGTGCAGTAAACAAGCGCAT
AGATCATGCCACCAAAGGCCCAAGCAATTCCTTGGATACCGACAGTGGAG
CACTTGGTGTTAGACTTAGAGACAC
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