CN187854

Overview
NameCN187854
Unique NameCN187854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3381 contig Csv1_Contig3381:373..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187854 vs. ExPASy Swiss-Prot
Match: F10AL_ARATH (FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 2
Query:   62 VDFSKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGGPK 238
            +DFSKILNDPELM AFSDPEVMAALQDVMKNPANLA+HQANPKVAP+IAKMM KF GP+
Sbjct:  383 MDFSKILNDPELMTAFSDPEVMAALQDVMKNPANLAKHQANPKVAPVIAKMMGKFAGPQ 441          
BLAST of CN187854 vs. ExPASy Swiss-Prot
Match: F10A1_PONAB (Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = 2
Query:   71 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 232
            ++IL+DPE++AA  DPEVM A QDV +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367          
BLAST of CN187854 vs. ExPASy Swiss-Prot
Match: F10A1_HUMAN (Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = 2
Query:   71 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 232
            ++IL+DPE++AA  DPEVM A QDV +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367          
BLAST of CN187854 vs. ExPASy Swiss-Prot
Match: F10A5_HUMAN (Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 32/54 (59.26%), Postives = 45/54 (83.33%), Query Frame = 2
Query:   71 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 232
            ++IL+DPE +AA  DPEVM A QDV +NPAN++++Q+NPKV  +I+K+ AKFGG
Sbjct:  314 NEILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367          
BLAST of CN187854 vs. ExPASy Swiss-Prot
Match: F10A1_MOUSE (Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 31/54 (57.41%), Postives = 46/54 (85.19%), Query Frame = 2
Query:   71 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 232
            ++IL+DPE++AA  DPEVM A QDV +NP+N++++Q+NPKV  +I+K+ AKFGG
Sbjct:  316 NEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369          
BLAST of CN187854 vs. ExPASy Swiss-Prot
Match: F10A1_CHICK (Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2
Query:   71 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFG 229
            ++IL+DPE++AA  DPEVMAA QDV +NPAN++++Q NPKV  +I K+ AKFG
Sbjct:  306 NEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKFG 358          
BLAST of CN187854 vs. ExPASy Swiss-Prot
Match: F10A1_RAT (Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 31/54 (57.41%), Postives = 45/54 (83.33%), Query Frame = 2
Query:   71 SKILNDPELMAAFSDPEVMAALQDVMKNPANLAQHQANPKVAPIIAKMMAKFGG 232
            ++IL+DPE++AA  DPEVM A QDV +NP+N++++Q NPKV  +I+K+ AKFGG
Sbjct:  313 NEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366          
The following BLAST results are available for this feature:
BLAST of CN187854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
F10AL_ARATH7.191e-2488.14FAM10 family protein At4g22670 OS=Arabidopsis thal... [more]
F10A1_PONAB5.711e-1359.26Hsc70-interacting protein OS=Pongo abelii GN=ST13 ... [more]
F10A1_HUMAN5.711e-1359.26Hsc70-interacting protein OS=Homo sapiens GN=ST13 ... [more]
F10A5_HUMAN9.741e-1359.26Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV... [more]
F10A1_MOUSE1.272e-1257.41Hsc70-interacting protein OS=Mus musculus GN=St13 ... [more]
F10A1_CHICK2.170e-1260.38Hsc70-interacting protein OS=Gallus gallus GN=ST13... [more]
F10A1_RAT2.834e-1257.41Hsc70-interacting protein OS=Rattus norvegicus GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187854 ID=CN187854; Name=CN187854; organism=Citrus sinensis; type=EST; length=556bp
AGTCCCAGGTGGCATGCCAGGAGGCTTCCCGGGTGGCATGCCAGGAGGGG
GGCCTGGAAATGTTGATTTTAGCAAGATATTAAATGACCCTGAGTTGATG
GCAGCATTTAGCGATCCAGAAGTCATGGCTGCTCTTCAAGATGTAATGAA
GAACCCTGCTAATCTCGCTCAGCATCAAGCAAATCCCAAAGTGGCTCCCA
TAATTGCTAAGATGATGGCCAAGTTTGGAGGACCCAAGTAGATTGCTTTC
CGGGCTGGCATCTTATTTTGTTGTTGGTGAATGGTAACCTTTGTGTGTCA
CATCTCATGAATCTTGTGCGGCTCTTACGATTTCTGGGTATGGTATGGAT
TAGGAATGTTTGGCAGCTGCATCTACATATCTGCTGGGAATTTTTCTTTC
TGGGTGAAAGGATTGAGTTTATGTAGTGGTTTAAAATTTCGTCCTCAAAT
TCTTGTCTTAGTTGCTGAACAAAGAATGTGCTTTCATAACTTGGGACTAG
TTTTTACTTGCAGAATTATTAAAGGAATGCCATAGCCTATAAAAAAAAAA
AAAAAA
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