CN187848

Overview
NameCN187848
Unique NameCN187848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187848 vs. ExPASy Swiss-Prot
Match: DOF52_ARATH (Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31
Identity = 75/140 (53.57%), Postives = 93/140 (66.43%), Query Frame = -1
Query:  367 PGAWN-IPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQ---HKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDK-ADSIGRGGLFKAFQQKND--GRGHIAGTSPVLQANPAALSRSLNFQESS 765
            PGAWN   W+PQP SP    S PNSPTLGKHSR+E+  +   +  + +    +++  ERCLWVPKTLRIDDP +AAKSSIW TLGIK D+ AD+    G F++  ++      G + G  P LQANPAALSRS NF ESS
Sbjct:  323 PGAWNSFTWMPQPNSPS--GSNPNSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSIWETLGIKKDENADTF---GAFRSSTKEKSSLSEGRLPGRRPELQANPAALSRSANFHESS 457          
BLAST of CN187848 vs. ExPASy Swiss-Prot
Match: DOF33_ARATH (Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.028e-23
Identity = 69/132 (52.27%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  373 WNIPWIP--QPTSPKTPS-SAPNSPTLGKHSREESLVKASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKND-GRGHIAGTSPVLQANPAALSRSLNFQE 756
            W IP +P  Q +SP +   S  NSPTLGKH R+E   K  N   ++Q        C+ VPKTLRIDDP +AAKSSIWTTLGIKN+       GG+FK F  K        A  SPVL ANPAALSRS NF E
Sbjct:  322 WTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNETERKQKAG-----CVLVPKTLRIDDPNEAAKSSIWTTLGIKNEA--MCKAGGMFKGFDHKTKMYNNDKAENSPVLSANPAALSRSHNFHE 446          
BLAST of CN187848 vs. ExPASy Swiss-Prot
Match: DOF55_ARATH (Dof zinc finger protein DOF5.5 OS=Arabidopsis thaliana GN=DOF5.5 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.453e-17
Identity = 60/131 (45.80%), Postives = 72/131 (54.96%), Query Frame = -1
Query:  373 WNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKND---GRGHIAGTSPVLQANPAALSRSLNFQE 756
            W++P +  P S     S+P S TLGKHSR+E           E  K+      + VPKTLRIDDP +AAKSSIWTTLGIKN+         +F  F  K +          TS VL ANPAALSRS+NF E
Sbjct:  190 WSMPVLSSPVS-----SSPTS-TLGKHSRDED----------ETVKQKQRNGSVLVPKTLRIDDPNEAAKSSIWTTLGIKNEV--------MFNGFGSKKEVKLSNKEETETSLVLCANPAALSRSINFHE 296          
The following BLAST results are available for this feature:
BLAST of CN187848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DOF52_ARATH6.648e-3153.57Dof zinc finger protein DOF5.2 OS=Arabidopsis thal... [more]
DOF33_ARATH1.028e-2352.27Dof zinc finger protein DOF3.3 OS=Arabidopsis thal... [more]
DOF55_ARATH2.453e-1745.80Dof zinc finger protein DOF5.5 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187848 ID=CN187848; Name=CN187848; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTCGAATAGAAGAAGTTGAATTTGATTCCCATATTTATTTTAGC
ACTTATGGGAAATTTATGGTACACAAACTCACACTTTTCTACCTCTCACT
ATTTTGCATATATAAACTATGTACATGAACTCGCAAACAACCTAACCTCC
AACAAAAAGGGAAAAAAGAAAAAGAAAAATCGGTTGCCACTTCAGCTAAG
CTCTCTTCTCCTAAGAAGACAATGAAACTGTTGTAAGAGTTCATTTCGAA
TGAGGATGGTGAATGTATATGACCTTGGAAGGAAGCAAAAATGGAGAGAC
TTGCAAGGATCAGTGACACTTGCACTACCACCTTAACCAGATACAAGTTG
ATGACCTATCTAATTACGAGCTCTCTTGGAAATTGAGTGATCTAGATAAT
GCTGCTGGATTGGCTTGTAAGACCGGAGATGTTCCAGCAATGTGACCCCT
TCCATCATTCTTCTGTTGGAATGCCTTGAAGAGTCCTCCTCTGCCAATGG
AATCAGCCTTATCATTCTTAATCCCTAGTGTCGTCCATATGGAGCTCTTT
GCAGCATCTCCAGGGTCATCGATCCTCAATGTTTTTGGAACCCAGAGACA
TCTTTCGGCATTGTTTTCTTTGTGTTGCTCCTGTCCCTCAGAGTTGCTTG
CTTTTACCAAGCTCTCCTCCCTTGAATGCTTTCCTAGTGTTGGAGAGTTT
GGAGCCGAGCTTGGGGTTTTTGGAGAAGTTGGTTGAGGAATCCAAGGGAT
ATTCCAAGCGCCCGGTACAGTACA
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