CK938725

Overview
NameCK938725
Unique NameCK938725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10765 contig Csv1_Contig10765:433..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938725 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.061e-18
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    8 YINQYGAXXEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELKDFIASLLINPVPI 253
            Y+NQ+G   +EA    +K  ++ WK+INEEC+R + V V  LMRI+NL R  DV YKY DGYTD+++LK F+  L ++P+ I
Sbjct:  520 YMNQHGVSKDEAVKILQKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVSYKYGDGYTDSQQLKQFVKGLFVDPISI 601          
BLAST of CK938725 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 7.834e-18
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    8 YINQYGAXXEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELKDFIASLLINPVPI 253
            Y+ Q+G   E A       VS+AWKD+N+E +RP + P PLLMR+LNL+R  DV Y+Y+D YT+ + LK+ I SLLI  +PI
Sbjct:  466 YMQQFGVSKERAVEVMGNIVSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFYRYQDAYTNPKLLKEHIVSLLIETIPI 547          
BLAST of CK938725 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.023e-17
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    8 YINQYGAXXEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 253
            Y+ QYG   +EAY+EF K + ++WKD+NEE L+PT +P P+L R LNL R  DV+Y+  DGYT   +  K  I SLLI+P+ I
Sbjct:  473 YMKQYGVTAQEAYNEFNKHIESSWKDVNEEFLKPTEMPTPVLCRSLNLARVMDVLYREGDGYTHVGKAAKGGITSLLIDPIQI 555          
BLAST of CK938725 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    8 YINQYGAXXEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 253
            Y+ +YG   +EAY  F K V +AWKD+N+E L+PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI PV +
Sbjct:  472 YMEEYGVTAQEAYDVFNKHVESAWKDVNKEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPVAL 554          
BLAST of CK938725 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.106e-15
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    8 YINQYGAXXEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 253
            Y+ +YG   +EAY  F K V +AWKD+N+E L+PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI P+ +
Sbjct:  472 YMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of CK938725 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.080e-14
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 2
Query:    8 YINQYGAXXEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 253
            Y+ +YG   +EAY  F K V +AWKD+N+E  +PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI P+ +
Sbjct:  472 YMEEYGVSAQEAYDVFNKHVESAWKDVNQEFQKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of CK938725 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.023e-14
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 2
Query:    8 YINQYGAXXEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 253
            Y+ +YG   +EAY  F K V +AWKD+N+  L+PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI P+ +
Sbjct:  472 YMEEYGVTAQEAYDVFNKHVESAWKDVNQGFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554          
The following BLAST results are available for this feature:
BLAST of CK938725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CASS_RICCO2.061e-1848.78Casbene synthase, chloroplastic OS=Ricinus communi... [more]
HUMS_ARATH7.834e-1850.00Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
DCS3_GOSAR1.023e-1750.60(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
DCS2_GOSAR6.207e-1548.19(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
DCS1_GOSAR8.106e-1546.99(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS4_GOSAR3.080e-1445.78(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
DCS1_GOSHI4.023e-1445.78(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004439_C05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938725 ID=CK938725; Name=CK938725; organism=Citrus sinensis; type=EST; length=452bp
GCGGGGTTACATCAACCAATATGGAGCAANNNAAGAGGAAGCATACAGTG
AGTTCCGGAAACAAGTTTCAAATGCATGGAAGGATATAAATGAGGAATGC
CTGCGCCCAACTCTTGTGCCAGTGCCACTTCTTATGCGAATTCTCAATCT
TACACGAGCTGCAGATGTCGTTTACAAGTATAAAGATGGCTACACTGACA
CCGAAGAGCTGAAAGATTTTATTGCTTCTCTGCTTATTAATCCTGTGCCC
ATATGAGCATGATATTAACCTTATGTTTCGACACCCTGCTGGAAAATAAT
TAGTCCATTGCCGTTTCAGCTTGGATGCTTTTTAAAAATAAATTGAAGGG
TGGTGATCCCCGTTGTAATCAGACTGCACTCAAGTAGACAAGTTATAATA
AAGTTTTTATAGCTCTATTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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