CN187844

Overview
NameCN187844
Unique NameCN187844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN187844 vs. ExPASy Swiss-Prot
Match: Y3272_ARATH (Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.921e-66
Identity = 110/142 (77.46%), Postives = 129/142 (90.85%), Query Frame = -2 
Query:  249 QEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPVTKRMILVGEVFQFHLDSLTWSVIGKLPYRIKTTLTGFWDGWLYFTFGQRDRGPENPQPRKVIGEMWRTKL 674
            QEGDFMAKP SPIFKCSRR E+  G+VYM+D+EMKWK+LPPMPK NSHIE AW+IVNNSI+I GGTT+ HPVTKR++LVGE+F+F LD+LTWSVIG+LPYR+KT + GFW+G+LYFT GQRDRGP+NPQP KVIGEMWRTKL
Sbjct:  283 QEGDFMAKPNSPIFKCSRRREIFNGEVYMMDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRFQLDTLTWSVIGRLPYRVKTAMAGFWNGYLYFTSGQRDRGPDNPQPGKVIGEMWRTKL 424
The following BLAST results are available for this feature:
BLAST of CN187844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3272_ARATH2.921e-6677.46Kelch repeat-containing protein At3g27220 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187844 ID=CN187844; Name=CN187844; organism=Citrus sinensis; type=EST; length=675bp
TTTTTTTTTTTTTTTTTCAGCCAGTGTGGTAACATACCTTTTTATCGAAG
AATGAAGGTAACAATCTTTTTCATTGTTAACAAAATTGAGTAAAAGAGGT
TTAATAAGATTGTAGATCAACAGACATTTAGCTGAAGGGAAAAAATCAAT
TTGGCAAAACTAACCTAATTCAAAAATCGAAATGCCACATCATGAACCTA
TCAAAATCTTACAAGGTGTTTAGAAGGTAATGAGTTTTATCATAAATGCA
ATTTGGTTCTCCACATTTCTCCGATAACCTTCCTTGGCTGTGGATTTTCT
GGTCCTCTGTCTCGCTGCCCAAAAGTAAAATACAGCCATCCATCCCAGAA
GCCAGTCAAGGTGGTTTTTATACGGTAAGGAAGCTTTCCGATAACTGACC
ATGTCAGTGAGTCTAAGTGGAATTGAAAAACTTCTCCAACCAGGATCATC
CTTTTGGTCACGGGGTGCTTTTCCGTTGTACCTCCTGTTATGATAATTGA
ATTATTGACAATTACCCAAGCACACTCTATATGAGAGTTGGGCTTTGGCA
TTGGAGGTAACACTTTCCACTTCATTTCATCATCCAACATATAAACATCA
CCATAAACTACCTCGTGCCTGCGTGAGCATTTGAAAATTGGAGACCCAGG
TTTGGCCATGAAATCACCCTCTTGA
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