CK938721

Overview
NameCK938721
Unique NameCK938721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938721_ssr15 microsatellite CK938721_ssr15:15..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:115..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 290
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S +   VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIM--TVVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 3
Query:  102 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 293
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.314e-18
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTC 287
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYI-EDVVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTC 287
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 290
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.834e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSH-----FEEVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.834e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSH-----FEEVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHF--EMAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK938721 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVCTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 290
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHF--EMAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK938721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.389e-2369.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.772e-1860.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.314e-1867.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV6.302e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO6.302e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.834e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.834e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.927e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.112e-1248.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004439_C02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938721 ID=CK938721; Name=CK938721; organism=Citrus sinensis; type=EST; length=595bp
GCGGGGATCANNNCAGCAAAGCAAAGCAAGTTNNNTACAATAAAGAGCCC
TCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGGA
CACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGG
GAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCTGC
ACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCCGAAGGTAACTGCAA
GTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAAT
AAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATAT
TGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCT
CTACTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGT
GTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCA
TGTAATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTTTA
ATGTATTATTGTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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