CN187843

Overview
NameCN187843
Unique NameCN187843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.030e-23
Identity = 71/178 (39.89%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            G  A VTG A GIGRA + AL  KG  V +VD + E G +  A +++   KF         +FI+CDV + +     F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G+V FTRS
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDE---KFEPQ----KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRS 164          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.978e-23
Identity = 69/178 (38.76%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            G  A VTG A GIGRA + AL  KG  V +VD + E G +  A ++++             +FI+CDV + +     F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G+V FTRS
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEP-------QKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRS 164          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.531e-22
Identity = 69/178 (38.76%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            G  A VTG A GIGRA +  L  KG  V +VD + E G +  A +++E             +FI+CDV +       F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + GVIINM S AGL P    P+Y ASK G++ FTRS
Sbjct:    5 GKVALVTGAAQGIGRAFAEGLLHKGAKVALVDWNLEAGVKCKAALDEEFEP-------QKTLFIQCDVADQEQLRDTFTKVVDYFGRLDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQHGGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRS 164          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.926e-22
Identity = 68/178 (38.20%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            G  A VTG A GIGRA + AL  KG  V +VD + E G +  A ++++             +FI+CDV +       F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+ INM S AGL P    P+Y ASK G+V FTRS
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVKCKAALDEQFEP-------QKTLFIQCDVADQEQLRDTFRKVVDHFGKLDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRS 164          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            G  A VTG A GIG+A + AL   G  V +VD + E G +  A ++++             +F++CDV + +     F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G++ FTRS
Sbjct:    5 GKVALVTGAAQGIGKAFAEALLLHGAKVALVDWNLEAGVKCKAALDEQFEP-------QKTLFVQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGVNNE-----------KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRS 164          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21
Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  127 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS 654
            G  A VTG A GIG+A + AL   G  V +VD + E G +  A ++++             +FI+CDV + +     F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IIN+ S AGL P    P+Y ASK G++ FTRS
Sbjct:    5 GKVALVTGAAQGIGKAFTEALLLHGAKVALVDWNLETGVKCKAALDEQFEP-------QKTLFIQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGVNNE-----------KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRS 164          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 68/176 (38.64%), Postives = 93/176 (52.84%), Query Frame = 1
Query:  133 SAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENA-KFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            +  +TGGASGIG A   A  G+   V V D+ E +G+   A+V KEN  + H         F++ D+T+      A E  V T+GGLD+ IN+AGI    P HE +      W   L VNL  +   ++ A+  M AA K G IIN  S  GL  +   P Y+ASKGGV+  T+S+
Sbjct:    7 TVLITGGASGIGYAAVQAFLGQQANVVVADIDEAQGE---AMVRKENNDRLH---------FVQTDITDEAACQHAVESAVHTFGGLDVLINNAGIEIVAPIHEMELS---DWNKVLQVNLTGMFLMSKHALKHMLAAGK-GNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSM 166          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 1
Query:  133 SAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENA-KFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            +  +TGGASGIG A   A   +   V V D+ E +G+   A++ KEN  + H         F+  D+T+      A    V  +GGLD+ IN+AGI    P HE +     +W   L+VNL  +   ++ A+  M  + K G IIN  S  G+  +   P Y+ASKGGV+  TRS+
Sbjct:    7 TVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGE---AMIRKENNDRLH---------FVHTDITDEPACQNAIRSAVDKFGGLDVLINNAGIEIVAPIHEMELS---NWNKVLNVNLTGMFLMSKHALKYMLKSGK-GNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSM 166          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: DHR11_CHICK (Dehydrogenase/reductase SDR family member 11 OS=Gallus gallus GN=DHRS11 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 61/186 (32.80%), Postives = 95/186 (51.08%), Query Frame = 1
Query:  112 MELKPGLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMF-IRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAK-KPGVIINMGSSAG--LYPFYTDPIYSASKGGVVLFTRSL 657
            ME   G  A VTG + GIG A++ AL   G+ V     S +K +++AA  +        + G+P  +   +CD++N  +  + F      + G+D+CIN+AG++ P P    +T+G   WR  +DVN++AV  CT++A   M+      G IIN+ S  G  + P      YSA+K  V   T  L
Sbjct:    1 MERWTGRVALVTGASVGIGAAVARALVQHGMKVVGCARSVDKIEKLAAECQ--------SAGYPGTLIPYKCDLSNEEEILSMFSAIKTLHQGVDVCINNAGLARPEPLLSGKTEG---WRTMIDVNVMAVSICTREAYQSMKERNIDDGHIININSMNGHSVVPQSVVHFYSATKYAVTALTEGL 175          
BLAST of CN187843 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 57/173 (32.95%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  142 VTGGASGIGRALSLALAGKGVFVTVVDLS-EEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL 657
            VTGG+ G+GRA+++    +   V V   S EE+  EV   +E+   +         A+ +R DVT   D     E  V  +G LD+ IN+AG+ NP+P HE   +   +W   +D NL      +++AI         G +INM S   + P+     Y+ASKGG+ L T +L
Sbjct:   12 VTGGSKGLGRAMAVRFGQEQSKVVVNYRSNEEEALEVKKEIEEAGGQ---------AIIVRGDVTKEEDVVNLVETAVKEFGSLDVMINNAGVENPVPSHELSLE---NWNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETL 172          
The following BLAST results are available for this feature:
BLAST of CN187843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PGDH_MACFA4.030e-2339.8915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
PGDH_HUMAN8.978e-2338.7615-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
PGDH_CAVPO1.531e-2238.7615-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]
PGDH_BOVIN9.926e-2238.2015-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
PGDH_MOUSE1.693e-2136.5215-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mu... [more]
PGDH_RAT3.772e-2136.5215-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
BACC_BACSU9.291e-2038.64Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC2_BACSU4.316e-1735.23Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
DHR11_CHICK6.232e-1632.80Dehydrogenase/reductase SDR family member 11 OS=Ga... [more]
DHG2_BACME8.139e-1632.95Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005B12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187843 ID=CN187843; Name=CN187843; organism=Citrus sinensis; type=EST; length=677bp
AGGTGTTCAAATAAATACCCGGGAAAAGGGGCAGTTAAAGCCCGATCACA
TAAGAAAACTCTTAACCGAGTAGTTTAATCGCTTCCCTTTGCCTCTCTGT
TTGTTCATAAAATGGAGCTCAAACCGGGCTTATCAGCTTTTGTCACCGGC
GGTGCATCTGGGATTGGTAGAGCTTTGAGCCTAGCTCTTGCAGGGAAGGG
AGTCTTTGTGACAGTTGTTGATCTCTCTGAAGAAAAGGGAAAGGAAGTTG
CAGCGCTTGTTGAAAAAGAGAATGCCAAGTTTCATTCAAACTTAGGATTT
CCATCTGCTATGTTTATAAGATGTGATGTGACCAACACAAGGGATACAGC
TGCTGCTTTTGAGAAGCACGTAGCTACATATGGAGGATTGGATATATGTA
TCAACAGTGCTGGCATAAGTAATCCCATTCCATTCCACGAGGATCAAACT
GATGGCACACGTTCATGGAGATTCACTCTTGATGTGAACTTGGTTGCAGT
TATTGATTGCACTCAGAAAGCGATTGGAATTATGCAAGCTGCAAAAAAGC
CTGGAGTGATTATAAATATGGGATCTTCTGCAGGACTTTATCCATTTTAC
ACAGATCCAATCTACTCTGCTTCCAAAGGTGGTGTTGTTTTATTTACTAG
ATCACTTACTCCCTACAAAAGCAAGGG
back to top