CK938716

Overview
NameCK938716
Unique NameCK938716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938716_ssr414 microsatellite CK938716_ssr414:414..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:1..430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.569e-33
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 2
Query:   77 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            MASGDVE+RCFVGGLAWAT D +L  AF  YGD+++SKIINDRETGRS GFGFVTF+DEK+ + AI+GMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.665e-32
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = 2
Query:   77 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            MAS DVE+RCFVGGLAWAT D +L  AF  YG++L+SKIINDRETGRS GFGFVTF+DEKS + AI+GMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.841e-31
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 2
Query:   77 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            MAS DVE+RCFVGGLAWAT + SL  AF  +G++++SKIINDRETGRS GFGFVTF+DEKS + AI+GMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.405e-31
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 2
Query:   89 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            +VE+RCFVGGLAWAT D SL +AF  +GDI +SKIINDRETGRS GFGFVTF+DEKS R AI+GMNGQ LDGR ITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.905e-28
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 2
Query:   89 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            +VE+RCFVGGLAWAT D+ L   F  +G++++SKIINDRETGRS GFGFVTF+DEKS + AI  MNG+ LDGRTITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.489e-28
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 2
Query:   77 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            MA+ DVE+RCFVGGLAWAT++ SL  AF +YG+IL+SK+I DRETGRS GFGFVTF  E S   AI+ MNG+ LDGR ITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.250e-28
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 2
Query:   89 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            +VE+RCFVGGLAWAT D  L   F  +GD+++SKIINDRE+GRS GFGFVTF+DEK+ R AI+ MNG+ LDGR ITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.544e-28
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   89 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            DVE+RCFVGGL WAT D SL  AF  YGD+++SKII DRETGRS GFGFVTF  +++ R AI+ MNGQ+LDGR ITVNEAQ
Sbjct:    3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.006e-27
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 2
Query:   77 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            MA+ DVE+RCFVGGLAWAT + +L +AF  +G +++SK+I DRETGRS GFGFVTF  E+S   AI+ MNG+ LDGR ITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK938716 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 2
Query:  140 SSLHEAFGAYGDILESKIINDRETGRSTGFGFVTFRDEKSTRGAIKGMNGQNLDGRTITVNEAQ 331
            +SLH AF  YG++LESKII DRET RS GFGFVTF  E++ R AI+GMNG+ LDGR ITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of CK938716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GRP7_ARATH2.569e-3376.47Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP1_SINAL1.665e-3276.47Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP2_SINAL1.841e-3174.12Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_DAUCA2.405e-3177.78Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP10_BRANA1.905e-2870.37Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRPA_MAIZE2.489e-2868.24Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP8_ARATH3.250e-2869.14Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP_HORVU5.544e-2870.37Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SORBI8.006e-2763.53Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI4.704e-1970.31Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_B09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938716 ID=CK938716; Name=CK938716; organism=Citrus sinensis; type=EST; length=430bp
GGGGATTCCGCAGCGGTGCTGTCTCTAAGATTTTTCTTGTAATTTTTTCT
TAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCGAGTTT
AGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAACG
ATCGCGAGACTGGAAGATCCACAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGACAAGGGGCGCGATCAAAGGCATGAACGGTCAGAATCTCGA
CGGCCGTACCATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGCG
GTGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGTGGTGGA
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