CK938715

Overview
NameCK938715
Unique NameCK938715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.624e-47
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 365
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.642e-46
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 365
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 91          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.238e-46
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 365
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.044e-45
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 365
            MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.008e-45
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 365
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.219e-43
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 365
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.666e-38
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 365
            M KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.103e-37
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 365
            M KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.211e-34
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 365
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHSKY C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKE 91          
BLAST of CK938715 vs. ExPASy Swiss-Prot
Match: RL37A_DICDI (60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.926e-32
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 3
Query:   93 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 356
            M KRTKK G+VGKYGTRYGASLRKQ+KKME++QH  Y C FCGK AV+R +VGIW C  C KV AGGA+T++TA+  TVRSTIRRLRE
Sbjct:    1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRE 88          
The following BLAST results are available for this feature:
BLAST of CK938715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_ORYSJ9.624e-4797.8060S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_GOSHI1.642e-4698.9060S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_PSEMZ6.238e-4696.7060S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH4.044e-4594.51Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH9.008e-4593.4160S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA2.219e-4392.3960S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU3.666e-3880.2260S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA3.103e-3779.1260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST3.211e-3473.6360S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL37A_DICDI3.926e-3271.5960S ribosomal protein L37a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_B07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938715 ID=CK938715; Name=CK938715; organism=Citrus sinensis; type=EST; length=543bp
GGGGGAGGGCTTTTAGCTCGGCTACTCTCATCTCTCTCTATTCTCAGCAG
CAGCAAGTGCGATTTTTAGAGTTTCTGGTCTGCTTCTGCAAAATGACAAA
GAGGACCAAGAAGGCAGGAATTGTTGGGAAGTATGGTACCCGTTATGGTG
CCAGTCTGCGTAAGCAGATTAAGAAGATGGAGGTCAGTCAACACAGCAAG
TACTTCTGTGAATTCTGTGGGAAGTATGCTGTGAAGAGGAAGGCTGTGGG
AATCTGGGGTTGCAAAGACTGTGGCAAGGTGAAAGCTGGAGGTGCTTACA
CTTTGAATACTGCTAGTGCTGTGACCGTGAGGAGTACAATTCGGAGGCTG
AGGGAACAGACCGAGAGTTAATTTTGTTGCCAATCTATCTTTTTTTTCAT
TTATTTGTGATAGGAGTAATTCCTGGGGCAGGATTGTCTAAAGGAATTTC
TATGCTTGGATATATGGTTTAAAAAGTTTTGAATTTGAATCTCTTTATTA
AACAGATTTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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