CN187837
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19 Identity = 76/230 (33.04%), Postives = 117/230 (50.87%), Query Frame = 1 Query: 22 LPPTTLSPGDMVCVR-----ICDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL 696 LP + SPGD+V +R R ++G V + E ISVAL+S P+ SV + L + +TYER ++ +++ RN + TL G K+ +++ + D K + SQKKA+ + K L +I GPPGTGKT L EII + V + +R+LV +N AVDN+V++LS G+ +VR+G+PAR+ P++ SL Sbjct: 88 LPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERH--ISVALKSEEDIPS-------SVTRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRN---SLFYTLIGRKKADVSIDQKLIGDIK------YFNKELNASQKKAVKFSIAVKE-LSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSL 298
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19 Identity = 74/229 (32.31%), Postives = 118/229 (51.53%), Query Frame = 1 Query: 22 LPPTTLSPGDMVCVRICDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 708 LP + + GD+V + + AT + +++VA + H +L R+ LA+ +TY+R +ALM L+K + P+ + + L G +E L+ ++ T D SQK+A++ L +K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+G+PAR+ +V SL ++ Sbjct: 78 LPSNSFTSGDIVGLYDTNENSQLATGVLTRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYNT---------TLDLSQKEAVSFALAQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVL 283
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19 Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 220 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 708 R+ LA+ +TY R +AL+ L+K + P+ + + LFG + SE+ D SQK+A++ L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+G+PAR+ ++ SL ++ Sbjct: 135 RLLKLANDVTYRRLKKALIALKK---YHSGPASSLIEVLFGRSAP---------SPASEIHPLTFFNTCLDTSQKEAVSFALSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVL 284
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18 Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 220 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 708 R+ LA+ +TY+R +AL+ L+K + P+ + + L G E L ++ T D SQK+A++ L +K + II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+G+PAR+ +V SL ++ Sbjct: 134 RLLKLANDVTYKRLKKALLTLKK---YHSGPASSLIDVLLGGSTPSPATEIPPLTFYNT---------TLDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVL 283
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18 Identity = 69/229 (30.13%), Postives = 114/229 (49.78%), Query Frame = 1 Query: 22 LPPTTLSPGDMVCVRICDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 708 LP + + GD+V + + AT + +++VA + H +L R+ LA+ +TY+R +ALM L+K + P+ + + L G + +E+ D SQK+A++ L +K + II GPPGTGKT + EII +AV+QG ++L AP+N AVDN+VE+L+ I+R+G+PAR+ + SL ++ Sbjct: 78 LPSNSFTSGDIVGLYDANESSQLATGVLTRITQK------SVTVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK---YHSGPASSLIDVLLGGSSP---------SPTTEIPPFTFYNTALDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVL 283 The following BLAST results are available for this feature:
BLAST of CN187837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN187837 ID=CN187837; Name=CN187837; organism=Citrus sinensis; type=EST; length=729bpback to top |