CN187837

Overview
NameCN187837
Unique NameCN187837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12582 contig Csv1_Contig12582:300..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 76/230 (33.04%), Postives = 117/230 (50.87%), Query Frame = 1
Query:   22 LPPTTLSPGDMVCVR-----ICDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL 696
            LP  + SPGD+V +R         R       ++G V  + E    ISVAL+S    P+       SV    +  L + +TYER    ++  +++    RN   +   TL G K+    +++  + D           K  + SQKKA+   +  K  L +I GPPGTGKT  L EII + V + +R+LV   +N AVDN+V++LS  G+ +VR+G+PAR+ P++   SL
Sbjct:   88 LPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERH--ISVALKSEEDIPS-------SVTRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRN---SLFYTLIGRKKADVSIDQKLIGDIK------YFNKELNASQKKAVKFSIAVKE-LSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSL 298          
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 74/229 (32.31%), Postives = 118/229 (51.53%), Query Frame = 1
Query:   22 LPPTTLSPGDMVCVRICDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 708
            LP  + + GD+V +   +     AT  +            +++VA +  H      +L        R+  LA+ +TY+R  +ALM L+K   +   P+ + +  L G       +E   L+ ++          T D SQK+A++  L +K  L II GPPGTGKT  + EII +AV+QG +VL  AP+N AVDN+VE+L+     I+R+G+PAR+  +V   SL  ++
Sbjct:   78 LPSNSFTSGDIVGLYDTNENSQLATGVLTRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYNT---------TLDLSQKEAVSFALAQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVL 283          
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19
Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  220 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 708
            R+  LA+ +TY R  +AL+ L+K   +   P+ + +  LFG             +  SE+          D SQK+A++  L++K  L II GPPGTGKT  + EII +AV+QG +VL  AP+N AVDN+VE+L+     I+R+G+PAR+  ++   SL  ++
Sbjct:  135 RLLKLANDVTYRRLKKALIALKK---YHSGPASSLIEVLFGRSAP---------SPASEIHPLTFFNTCLDTSQKEAVSFALSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVL 284          
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  220 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 708
            R+  LA+ +TY+R  +AL+ L+K   +   P+ + +  L G        E   L  ++          T D SQK+A++  L +K  + II GPPGTGKT  + EII +AV+QG +VL  AP+N AVDN+VE+L+     I+R+G+PAR+  +V   SL  ++
Sbjct:  134 RLLKLANDVTYKRLKKALLTLKK---YHSGPASSLIDVLLGGSTPSPATEIPPLTFYNT---------TLDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVL 283          
BLAST of CN187837 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 69/229 (30.13%), Postives = 114/229 (49.78%), Query Frame = 1
Query:   22 LPPTTLSPGDMVCVRICDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 708
            LP  + + GD+V +   +     AT  +            +++VA +  H      +L        R+  LA+ +TY+R  +ALM L+K   +   P+ + +  L G             +  +E+          D SQK+A++  L +K  + II GPPGTGKT  + EII +AV+QG ++L  AP+N AVDN+VE+L+     I+R+G+PAR+  +    SL  ++
Sbjct:   78 LPSNSFTSGDIVGLYDANESSQLATGVLTRITQK------SVTVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK---YHSGPASSLIDVLLGGSSP---------SPTTEIPPFTFYNTALDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVL 283          
The following BLAST results are available for this feature:
BLAST of CN187837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HCS1_SCHPO1.392e-1933.04DNA polymerase alpha-associated DNA helicase A OS=... [more]
SMBP2_MOUSE2.374e-1932.31DNA-binding protein SMUBP-2 OS=Mus musculus GN=Igh... [more]
SMBP2_HUMAN5.289e-1937.42DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGH... [more]
SMBP2_RAT2.625e-1837.42DNA-binding protein SMUBP-2 OS=Rattus norvegicus G... [more]
SMBP2_MESAU3.428e-1830.13DNA-binding protein SMUBP-2 OS=Mesocricetus auratu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187837 ID=CN187837; Name=CN187837; organism=Citrus sinensis; type=EST; length=729bp
AGTGTTGAAGGAAATCATCGACTGCCACCTACAACCCTTTCTCCTGGAGA
CATGGTTTGTGTGAGGATTTGTGACAGTAGGGGTGCATGTGCCACTTCTT
GCATACAGGGGTTTGTTCACAATCTTGGGGAGGATGGTTGCACCATCAGT
GTGGCTCTGGAATCTCGCCATGGCGATCCCACATTCTCTAAGCTCTTTGG
CAAGAGTGTGCGCATTGACCGTATCCAAGGATTGGCGGACACTCTAACTT
ATGAGCGCAATTGTGAGGCGTTGATGCTCCTTCAAAAGAATGGTTTGCAC
AAGAGAAATCCTTCTATTGCTGCAGTAGTTACATTATTTGGAGACAAGGA
AGATGTTACATGGCTTGAAGAGAATGATTTAGCAGATTGGTCTGAAGTGA
AATTGGATGGAATAATGGGCAAAACTTTTGATGACTCGCAGAAAAAGGCT
ATTGCCTTGGGTTTAAATAAGAAGCGGCCACTGCTGATAATCCAAGGACC
TCCTGGTACCGGTAAGACAGGTTTGCTTAAGGAAATTATAGCTCGTGCTG
TCCAACAAGGTGAAAGGGTACTAGTAACAGCGCCTACAAATGCAGCTGTT
GACAACATGGTTGAAAAACTTTCAGACGTTGGATTAAATATTGTGCGGGT
TGGAAACCCAGCACGCATATCTCCAGCTGTAGCATCAAAGTCTTTGGGTG
AAATTGTCAAGTCAAAGCTTGCAAGTTTT
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